Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq37 172 5e-38 >seq37 Length=17717 Score = 172 bits (190), Expect = 5e-38 Identities = 564/858 (66%), Gaps = 25/858 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| | ||||||||||| ||||| || || || || | | |||||| | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA--TTTATCG--CATCCCAATTCCAAC 16060 |||| |||| |||||||| ||| | ||| ||| | | ||||| || | || Sbjct 12618 CCATCCAATCGAAAGGATTG---GAAACTTTGTAGATTTTTGGAACATCC-AAGGCGAAA 12673 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 | |||||| || || |||||||| ||||| || ||| || || | ||||||| || || Sbjct 12674 AGTAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAAT 12732 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | | |||||| | | || | ||| ||| |||| | | ||| ||||| |||| Sbjct 12733 AAGATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTC--TGAT 12790 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAAT--AAGTGT-TTAAACATTATACA 16236 || | || | || ||| | || || ||| ||| | ||| | | || ||| Sbjct 12791 ATGATTTGTTGC-ACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAACA 12849 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||||| ||| | ||||| || | || || | || || |||||||| || || Sbjct 12850 GGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCC 12909 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| ||||| |||||||||| |||||| || || ||| ||||||||| | || Sbjct 12910 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 12969 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 || || || || ||| ||| | || ||| || | | || | | ||| || Sbjct 12970 TCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAGAA--TTC-AT 13026 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | ||| || | ||||| | || | ||||| | ||| Sbjct 13027 CCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCTTCAAA 13086 Query 16477 TAAATAAttttt--ttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || |||| |||||| | || ||||| |||| || |||| ||| || Sbjct 13087 --AAGCATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTT 13144 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC-TAGCTTCGGATAT 16593 || ||| || | ||| || | || |||||| ||||| | |||| | ||||| | ||| Sbjct 13145 TCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATA-CATCCTGGCTTCCGGTAT 13203 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||||| ||| | ||| || |||| |||||||| |||| || ||||| || || || Sbjct 13204 TTGTATTTCTCTGAGAAAATTTACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGC 13263 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||| || || | | | ||| ||||||| |||||| ||| ||| || |||||| Sbjct 13264 AAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTCTTTAAGACTTTCCCAGTC 13323 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 || ||| | | ||| | ||||| | |||||| || || | |||||||| Sbjct 13324 TCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTT 13383 Query 16774 ATACATTTTCCATATGTC 16791 |||||| ||| ||||| Sbjct 13384 ATACATCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511670460200