Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq37 172 5e-38 >seq37 Length=17717 Score = 172 bits (190), Expect = 5e-38 Identities = 502/755 (66%), Gaps = 41/755 (5%) Strand=Plus/Plus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||||||| | ||||| ||||| ||||||||||| || || | ||||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 13974 CCATAAAATCAAATGGATTTG-----TTGACATAAACACTTTATCACAACCTAGTTCTAA 14028 |||| |||| || ||||| | ||| || | ||| ||| || || | || Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTG---TAGATT-TTTGGAACATCCAAGG-CGAA 12672 Query 14029 TAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTA 14087 |||||||| || |||| || ||||||||||| | ||| || || | | |||||||| | Sbjct 12673 AAGTAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAA 12731 Query 14088 TTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA 14147 | || | ||||||| || | ||| | | |||| | ||||| || || Sbjct 12732 TAAGATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATA 12791 Query 14148 TAATAATCGTAATAATTTCATTAGAAGGAG-GATATTTTAGATGT-------TTAAAAAT 14199 | || | || || | | ||| | || |||| || | ||| | | Sbjct 12792 TGAT--------TTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATAC 12843 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 |||||| ||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| Sbjct 12844 TAAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGT 12903 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAA 14318 | ||| ||||| | ||| |||||||| | |||||| |||||| | || | | || |||| Sbjct 12904 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAA 12962 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378 | | |||||||| || ||| || | || | || ||| | || ||| | | Sbjct 12963 ATAGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAGAAT 13022 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 || |||||||| | |||||||| | || || |||| || || ||| | Sbjct 13023 TC---ATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTG 13079 Query 14439 CATTAAATA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 | | ||| | || | | | |||||| | | || ||| |||||||||||| | Sbjct 13080 CTTCAAAAAGCATTTGGCGT-TCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAA 13138 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT-CTAGCTTC 14556 || ||||| ||||| | || |||| || |||||| ||| || |||| || ||||| Sbjct 13139 TAAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCAT-AATACATCCTGGCTTC 13197 Query 14557 TGACCATTGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 | ||||| ||||||| ||||| || | ||||| ||||| |||| ||||||||| Sbjct 13198 CGGTATTTGTATTTCTCTGAG-AAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCA 13255 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14649 || || ||||| ||||| || | | ||| ||||| Sbjct 13256 CTTGCAGCAAAGAATGCTAAAACATATTTGATAAA 13290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345256328760