Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37 118 9e-22 seq45 93.3 4e-14 seq6 89.7 5e-13 >seq37 Length=17717 Score = 118 bits (130), Expect = 9e-22 Identities = 369/564 (65%), Gaps = 17/564 (3%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||||||| ||||| |||||||| |||||||| |||||| |||||| | || Sbjct 13401 GACATTTGGTCGATGTATAAAAAGGCCGAAGCATCATTTTGGGTTACTGAAGAAATTGAT 13342 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | | ||| | || || ||||| || ||||| |||| | | ||||||| ||| Sbjct 13341 CTGAGTCATGATATTAGAGACTGGGAAAGTCTTAAAGACCCTGAAAAACATTTTATCAAA 13282 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | || || || || || || ||| ||||||||||||| || || |||| | || | Sbjct 13281 TATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTGGCAGTAA-A 13223 Query 57747 TTTTCACA-AGAAGTGCAAGTGACGGAGGCGA-GATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| || |||| | ||| | |||| || | |||| | ||| | |||||| || | | Sbjct 13222 TTTTCTCAGAGAAATACAAATACCGGAAGCCAGGATG-TATTATGCTTTTCAAATGTCTA 13164 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA----CGTGAAGGAC 57860 |||| | | ||| |||| ||||| ||||| || |||| || |||| Sbjct 13163 TTGAGCAAATACATAGTGAAACTTATTCACTACTTATTGATAGATATATCACTGAAATTA 13104 Query 57861 AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 || ||| ||| | || || | || || || || | |||||| Sbjct 13103 AAGAACGCCAAATG----CTTTTTGAAGCAATTTCTCATATTGAAGCAGTTAAGAAGAAG 13048 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAAT 57979 ||||| ||| ||| |||||||| || | || | | ||||| || || | || Sbjct 13047 GCAGAATGGGCAACTAAATGGATGAA----TTCTGAGCGATCTTTCGCTGAAAGAATTAT 12992 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 | ||| || ||||| || || | ||||| || |||||| ||||| |||||| | Sbjct 12991 TGGATTCTGTGCTGTCGAGGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCT 12932 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 || ||||| || || ||||| || || || ||| || || | || || || || Sbjct 12931 TAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGCCGTGATGA 12872 Query 58100 GGGTCTCCATACTGATTTTGCGTG 58123 || || ||| |||||||||| || Sbjct 12871 AGGCCTACATGCTGATTTTGCCTG 12848 >seq45 Length=133594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || |||||| ||||||| || || ||||| | || |||||||| Sbjct 54605 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 54664 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| | || || || ||| | | | |||||||| | || || || Sbjct 54665 TCAGATACTATCGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAAGGAATTCCACCTGA 54723 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | || || || || || || || || || || || | ||||| Sbjct 54724 TCAACAACGTTTGATCTTTGCAGGAAAGCAATTAGAGGATGGTAGAACCCTCTCTGATTA 54783 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || || | ||| | ||| | ||||| ||||| |||| Sbjct 54784 CAACATTCAAAAAGAGTCTACCTTACATTTAGTATTGAGACTCAGGGGTGGTA 54836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||||| || || ||||| | || ||||| || || Sbjct 55064 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCA 55123 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | || || || ||| | | | |||||||| | || || || || Sbjct 55124 GATACTATCGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAAGGAATTCCACCTGATCA 55182 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 55183 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55242 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||| || ||| | || | ||| | ||||| || ||||| Sbjct 55243 CATTCAAAAAGAGTCCACTTTACACTTAGTATTGAGACTTAGAGGCGG 55290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || || || ||||| | || ||||| || || Sbjct 54836 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACTTTGGAAGTTGAGCCTTCA 54895 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || |||| | | || ||| | | | ||||| || | || || || || Sbjct 54896 GATACAATTGAGAACGTTAAGGCAAAGATTCAAG-ATAAGGAGGGGATACCACCTGATCA 54954 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 54955 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 55014 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||| || || | ||| | ||| | ||||| ||||| |||| Sbjct 55015 CATTCAAAAAGAGTCTACCTTACATTTAGTATTGAGACTCAGGGGTGGTA 55064 >seq6 Length=322908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||||||||| || || ||||| ||||| || || ||||| | || |||||||| Sbjct 206853 AAAGATGCAAATTTTTGTTAAAACTCTAACAGGGAAGACCATCACATTGGAAGTTGAACC 206912 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || || | | | || | || || || || || ||| ||||| ||| | || || | Sbjct 206913 TTCGGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGCATTCCTCCTG 206971 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | || |||||| | || || ||||| || || |||||||| | ||| | |||| Sbjct 206972 ATCAACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTCTATCTGATT 207031 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | || || || || || || ||| | || | ||| | ||||| || || ||| Sbjct 207032 ACAATATCCAGAAGGAGTCCACTTTGCACTTAGTATTGAGACTTAGAGGTGGT 207084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766082391440