Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq46 289 4e-73 seq37 150 2e-31 >seq46 Length=385502 Score = 289 bits (320), Expect = 4e-73 Identities = 1170/1819 (64%), Gaps = 42/1819 (2%) Strand=Plus/Minus Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 ||| || || || ||||||| ||| |||| || |||||||||||| | || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 | | || | | || | | |||||||| |||| |||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA- 62262 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 62263 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTACCATAA 62319 ||| | || |||| || || | | | |||| ||||| ||| || | | || | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 | | | ||| | || ||||| |||||| || |||| | | || | ||||| Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG-TAAATATTACTGGTATAC 62438 | || ||||| ||| || ||||| | ||| || || ||| ||||| || || | Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 || || | ||| || || || |||||||| | ||| || || || ||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTC 62558 | |||||| ||| | || ||| ||| | ||| ||||||| || ||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 62559 CAAAGATCCGAC---GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCG 62615 ||||| | || || ||| | |||||| |||||| ||||| || Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 62616 TACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCT 62675 || || |||||| || |||||||| | || || || || | ||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 62676 AATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTA 62735 | || | ||||| ||| |||||||| | ||||| | | | ||| || Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGAC 13282 Query 62736 TCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 || |||| ||| ||| | ||||| ||| || | ||||||| ||||| || | Sbjct 13281 TCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 62855 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62914 |||||||| | ||| || ||| || || || || || | || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 62915 TCGCCCATCTATT-------ACAAACATGTTCAATGC-AACAGATGCCAGATTACACACG 62966 || | |||| |||||| | | || || || ||| ||||||||||| ||| Sbjct 13102 -CGTCTTGTTATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACG 13045 Query 62967 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATA 63026 || || || | ||| | || | || || |||||||| | ||||| | ||| Sbjct 13044 GCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATA 12985 Query 63027 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63086 || || ||||||| |||||||| || | || ||||| |||||| ||| ||||| Sbjct 12984 GTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGT 12925 Query 63087 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 63146 || || || ||||| |||| | | || ||| | | || |||| || Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCTGCGCTTTC--ATC 12868 Query 63147 GATTTGTATCTCCTTTCTC-TTTCGTATAGAGTATACA-ATCG-TTCG--AACTCGTCTC 63201 | ||| || | || |||| ||| | | || || | ||| || || || | Sbjct 12867 GTTTTCCTTCCACGGCCTTGTTTCTCATAC--TCTTCATATAGCTTCTTAAAGTCATCAC 12810 Query 63202 CCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 ||||||||| | ||||| ||||||||||| ||||| | | ||| ||| | || Sbjct 12809 CCCAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCT---TGAT 12753 Query 63262 CCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 |||| |||| | ||| || |||||||||| ||| || || ||| ||||| | Sbjct 12752 CCTTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGAC 12693 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| || || || || ||| || ||| || | ||| | | || |||| | Sbjct 12692 ATCTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGT 12633 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 ||||||||||||| || || || || | || || || ||| || ||||| || | Sbjct 12632 GCCACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATAT 12573 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 | ||||| |||| ||||||||| | |||||| ||||| | ||||| || | ||||| | Sbjct 12572 ACCTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTG 12513 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63558 | || ||||| ||| | | | ||||||||| | || | || | || |||| Sbjct 12512 TCCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTG 12453 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | | ||| || ||||||| |||| |||||| | || || | ||| ||| | Sbjct 12452 CAGTCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTT 12393 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | || | |||| |||||| |||||||| | || | || || | |||||| | Sbjct 12392 CTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGA 12333 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 || || | || || ||||| |||||| || | | | ||| ||||||| || | Sbjct 12332 GTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAG 12273 Query 63739 AGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 || ||||| ||| | ||||| || | || ||||| | | ||||| |||||| Sbjct 12272 CTTCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTT 12214 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 || |||| |||||||| ||||| || ||| |||||| |||||| ||||| || |||| Sbjct 12213 TCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAA 12155 Query 63857 ATAGTTGTATGAAAAGTCT 63875 ||| | ||| ||| ||| Sbjct 12154 ATAATCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 150 bits (166), Expect = 2e-31 Identities = 562/866 (65%), Gaps = 44/866 (5%) Strand=Plus/Plus Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 |||| ||||| || || | |||||||| || ||||| || || | | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| |||| || ||||||| ||| ||||| |||||| || |||| | ||| | Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 |||| || || || ||||| |||||| ||| | | | ||||| || || || | Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA 33531 ||| ||||||| || |||||| | | ||| | || || | || ||| || Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGAT-- 12795 Query 33532 ATCTAACGGTTTCTTCACTCGGTGGAT--GTAAT--AAATGT-------TTAAACATCAA 33580 || | ||||| ||| ||||| |||| | ||| | | || Sbjct 12796 ---------TTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAA 12846 Query 33581 ACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGA 33639 ||| || ||||| ||| || || || || || | ||||| | ||| |||||||| |||| Sbjct 12847 ACAGGCAAAATCAGCA-TGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGA 12905 Query 33640 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAG 33698 |||| ||||| || ||||| |||||||||||||| || | | | || | | || ||||| Sbjct 12906 GTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAAT 12964 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 | ||||| || || ||| || |||||| ||| || | || |||| | | Sbjct 12965 AGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGAT-CGCTCAGAATT 13023 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA----TGG 33813 ||||| || ||||| || |||||||| || || || || | | | | Sbjct 13024 CATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACT----GCTTCAATATGAGAAATTG 13079 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | ||| || | ||| ||| | || | | ||| |||| || | || || Sbjct 13080 CTTCAAAAAGCATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAAT 13139 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC-TAGCCTCG 33932 | |||| ||| || | ||||| | ||| ||||| | || | ||||| | || || Sbjct 13140 AAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTCC 13198 Query 33933 GTAATCTGCACTTCTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | || || | |||| | | ||||| | |||| || ||||| | || || |||||||| Sbjct 13199 GGTATTTGTATTTCTCTGAGAAAATT-TACTGCCAAGTTTTCCATAACAATACCATCACT 13257 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTA 34049 || ||||| || || || |||| ||| ||||||| |||||| ||| || || | Sbjct 13258 TGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAG--GGTCTTTAAGACTT 13315 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| || | ||||| | | | ||| | |||||| |||||||||||| || Sbjct 13316 TCCCAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCG 13375 Query 34110 GCCTTTTTATACATATTCCAGATGTC 34135 |||||||||||||| ||| ||||| Sbjct 13376 GCCTTTTTATACATCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817151254960