Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq46 338 6e-88 seq37 147 2e-30 >seq46 Length=385502 Score = 338 bits (374), Expect = 6e-88 Identities = 1192/1833 (65%), Gaps = 54/1833 (3%) Strand=Plus/Minus Query 36826 GTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTG 36885 || |||| |||||| || || ||||||| || | |||| || |||||||||||| Sbjct 13947 GTCCTCAAATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGAT 13888 Query 36886 GTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATA 36945 | | ||||| | | | ||| || |||| || ||| ||||| |||| | | Sbjct 13887 GATAACTTTGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACA 13828 Query 36946 AACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGAT--ATCTCCCAAACCG 37003 | | ||| || || || ||||| || || ||| | || | | || |||||||| | Sbjct 13827 TATGGACCCCTATCTGCAGCCATATC--AATTACTGTCTTTTGCTTAATTTCCCAAACAG 13770 Query 37004 TTTTATATATTTGTTTTATATTATCTGGTAA---ATCTAAATGTTGAATAGAACCATTAT 37060 | ||||| | | ||||| || || | | || || ||||||| ||||||| Sbjct 13769 TCTTATAAAGCTCACGTATATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTAT 13710 Query 37061 GTAACACAATTGTATTCT--TTATG-TCATTATTCCACATATTTCTACTTAT--TAGTTC 37115 | |||| |||||| ||| | | || || ||| || | | || | || || Sbjct 13709 TTG---CAATGATATTCTGCTTAAGCTTATCATCCCA--TAACCCAAGTTCTAGTAAATC 13655 Query 37116 TCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATAT 37175 | | || || |||||||| || || || ||||||| ||| || | ||| || Sbjct 13654 ATTTAGTAAATGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGGTGATAAAT 13595 Query 37176 ATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGT 37235 || ||| |||| |||| ||| || |||| ||| ||||| || || || || || Sbjct 13594 GTTTGAAGTGAATGGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGT 13535 Query 37236 AGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAG 37295 |||||||| | ||||| | ||| | | |||| | | |||||| | ||| || Sbjct 13534 TGGCATTGGAGATATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAG 13475 Query 37296 TTCATTCCAATCCCATAAATCTGT---TGGGTTCTTTAACCACATATCATATTGTAGAAT 37352 | || |||||| || | ||| ||| | | |||||||||| |||||| ||| Sbjct 13474 TGAATCCCAATCACAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAAT 13415 Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412 ||||||||| || |||||| | | |||||| || || ||||| || ||| || || || Sbjct 13414 ACCTTTACTTGCAGGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTC 13355 Query 37413 GCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTT 37472 || |||| || || || |||||||| || || || |||||| |||| ||| | || Sbjct 13354 ACAGCTAGCGTCAAGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTT 13295 Query 37473 TGCTTCTTCGCTATCGAATGCATAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGA 37530 ||| | || ||| ||| || | || || ||||| ||| ||||| | ||| ||| Sbjct 13294 AGCTCCCTCCGACTCGTATGG-TAAACGAAGCATCATAAA-ACAGTCAGCGAGACCTTGA 13237 Query 37531 ACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAA 37590 | || || || | || | ||| | ||| ||| | ||||| | | | |||| Sbjct 13236 ATGCCAATCCCCAATGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAA 13177 Query 37591 TAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATT----TTCGTAATTATTCT 37646 || | || ||||||||||| | ||| || ||| | || |||| | | | Sbjct 13176 TATCCAACGTCAATTATTTTATTCAAATTC----CTTGTAATCACCTTTGTAACTTCTTT 13121 Query 37647 CAACTTGTCGAACATAAATACGT-----TATTATT---AACAAATTTACTCAACGAAATA 37698 ||||| || || || || |||| |||| || |||||| || | |||| Sbjct 13120 TAACTTATCAAA-ATCAA-ACGTCTTGTTATTTTTGTCAACAAACTTTGGAAGGCCAATA 13063 Query 37699 GATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAG 37758 || | |||||||| || |||||||| || | || | | | || || || || || Sbjct 13062 GACGCCAGATTACAAACGGCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCAT 13003 Query 37759 AGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCT 37818 | ||||| || ||| || |||||||| | ||||| ||| |||| || |||| Sbjct 13002 AAGTTACTTGAGACAATAGTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCT 12943 Query 37819 TTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAA 37878 ||||| ||| | || ||||| || |||||||||| | || | ||| || Sbjct 12942 TTATAACAAATAAATGGTGTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCA-AAG 12884 Query 37879 CTTCTT-GCTTTAACGATCGCTTTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAA 37934 |||| ||||| | ||| ||| || | ||||||| || || | ||||| Sbjct 12883 TTTCTGCGCTTTCA---TCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAG 12827 Query 37935 TTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAG 37994 || ||||| |||| ||||| ||||| ||||| ||||| || |||||||| Sbjct 12826 CTTCTTAAAGTCATCACCCCAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAG 12767 Query 37995 AGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGT 38054 || ||| |||| ||| ||||| || | ||||| || | |||||| ||||| | |||| Sbjct 12766 AGTCCAATCTTGATCCTTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGG 12707 Query 38055 AAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA-T 38113 ||| | ||| ||| ||||| ||||| ||| |||| ||| | | ||| | Sbjct 12706 AAAGAGATCGCGACATCTCATCTCTTCCTTCCCGTGATT-TTTCCTAATTTCAATAAACT 12648 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 | | | |||| ||||||| ||||| | |||||| | || || ||| | || | | Sbjct 12647 CTACAACATCAACGTGCCACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTC 12588 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || |||| |||||| ||| | |||| |||||| | | ||||| || | || || | Sbjct 12587 CACCTTGATCAATATACCTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGT 12528 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 | || | || ||| | || ||||| | ||| | ||| |||||||| | | || Sbjct 12527 TGGACCTTCCATTTGTCCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCA 12468 Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAATATA 38352 ||| | ||||||||| || || || | ||||||| |||| || ||||| ||| Sbjct 12467 CTCCAAGGCCACCTGCA-GTCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATA 12409 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 || | ||| || || || |||| ||||||| ||||||||||| ||| Sbjct 12408 CCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGC 12349 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || | ||||| | ||| || | |||||| | || |||||| ||| || | | Sbjct 12348 GTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCG 12289 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 ||||| || | | || | || |||||||| | |||||| || ||| |||| ||| || Sbjct 12288 TATGTCTCAAGTGCAGCTTCAATATCACCACAGTGAATCCCACAAGAAACCCGCATCAGA 12229 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | ||| ||||||||||| | | ||| || | |||||| ||||| ||| |||| | Sbjct 12228 AGATGCTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCCAGG 12169 Query 38593 GTTTTTATTCCAAAATAACTATATGAATAATCT 38625 ||||| | |||||||| |||| | ||||| Sbjct 12168 GTTTTGAAGGCAAAATAATCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 147 bits (162), Expect = 2e-30 Identities = 504/767 (66%), Gaps = 33/767 (4%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||| | |||| |||||| || |||||||| || | ||||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||| | || ||| ||| |||| | | | || | | || Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 |||| || || || ||||| ||||| || | ||| | | | |||||||| ||||||| Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 11520 CCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCG 11579 | || |||| || | | | ||| | |||| | | ||| || || |||| || | Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTC--TGAT-AT-G 12793 Query 11580 ACGTTATAACTTCCTTAGA-TGGTGGATGTAA---TAAATGT-TTAAACATTAAACACGC 11634 | | | || || |||| || ||| ||| | ||| | | |||||| || Sbjct 12794 ATTTGTTGCACTCTAGGGACTGGTA-ATTTAAATTTAAGGGCCTTATATACTAAACAGGC 12852 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||||| ||||| ||||| || | || || ||||||||||||||||| | ||| || Sbjct 12853 AAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGG 12912 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | ||||| Sbjct 12913 CATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTCC 12972 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTC-TCCATATACCTTGTTGCT-AGA---TATC 11809 ||| ||||| ||| | | | |||||| | | | | | ||| ||| ||| Sbjct 12973 CTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGA-----TCGCTCAGAATTCATC 13027 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 ||||| | ||||| || || ||||| || || ||| || || || | | Sbjct 13028 CATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCTTCA--- 13084 Query 11870 AAATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 ||| |||||| |||| || | || | | |||| |||| || | || ||| || Sbjct 13085 AAAAGCATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTT 13144 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT-GCCTCTGAACA 11985 || ||| || | || |||| |||||||| |||| | ||||| | || || | Sbjct 13145 TCACTATGTATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTAT 13203 Query 11986 CTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 |||| || | | ||||| || | || || || || | |||||||||||||| | | Sbjct 13204 TTGTATTTCTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACTTGCAG 13262 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTA 12088 |||| ||||||| | || ||| ||||| | |||||| ||||||| Sbjct 13263 CAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTCTTTA 13309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524466176080