Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq46 291 1e-73 seq37 179 5e-40 >seq46 Length=385502 Score = 291 bits (322), Expect = 1e-73 Identities = 1166/1817 (64%), Gaps = 38/1817 (2%) Strand=Plus/Minus Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 ||| || || || ||||||| ||| |||| || |||||||||||| | || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 | | || | | || | | |||||||| |||| |||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 64997 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 65055 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 65056 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTGCCATAA 65112 ||| | || |||| || || | | | |||| ||||| ||| || ||| || | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 65113 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 65172 | | | ||| | || ||||| |||||| || |||| | | || | ||||| Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG-TAAATATTACTGGTATAC 65231 |||| ||||| || || ||||| | ||| || || ||| ||||| || || | Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 65232 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 65291 || || | | ||| || || || |||||||| | ||| || || || ||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 65292 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 65351 | |||||| ||| | || ||| ||| | ||| ||||||| || | ||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 65352 CAAAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCG 65408 ||||| | || || ||| ||||| |||||| ||||| || Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 65409 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 65468 || || |||||| ||||||||||| | || || || || ||||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 65469 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA 65528 | || | ||||| ||| || ||||| | ||||| | | | ||| || Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGAC 13282 Query 65529 TCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 65587 || |||| ||| ||| | ||||| ||| || | ||||||| ||||| || | Sbjct 13281 TCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 65588 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 65647 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 65648 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 65707 |||||||| | ||| || ||| || || || || || | || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 65708 TCGCTCATCTATT-------ACAAACATGTTCAATGC-AACAGATGCCAGATTACAAACG 65759 || | |||| |||||| | | || || || ||| ||||||||||||||| Sbjct 13102 CGTCTTGT-TATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACG 13045 Query 65760 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 65819 || || || | ||| | || | || || |||||||| | ||||| | || Sbjct 13044 GCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATA 12985 Query 65820 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 65879 || || ||||||| |||||||| || | || ||||| |||||| ||| ||||| Sbjct 12984 GTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGT 12925 Query 65880 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 65939 || || || ||||| |||| | | || ||| | | || |||| || Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCTGCGCTTTC--ATC 12868 Query 65940 GATTTGTATCTCTTTTCTC-TTTCGTATAGTGTATACAATCGTTCG--AACTCGTCTCCC 65996 | ||| || || |||| ||| | | | | ||| || || || ||| Sbjct 12867 GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCC 12808 Query 65997 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 66056 ||||||| | |||||| ||||||||||| ||||| | | ||| ||| | |||| Sbjct 12807 CAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCT---TGATCC 12751 Query 66057 TTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTT 66113 || |||| | ||| || |||||||||| ||| || || ||| | ||| | | Sbjct 12750 TTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACAT 12691 Query 66114 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGC 66173 || || || || || ||| || ||| || | ||| | | || |||| ||| Sbjct 12690 CTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGC 12631 Query 66174 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 66233 ||||||||||| || || || || | || || || ||| || ||||| || || Sbjct 12630 CACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATAC 12571 Query 66234 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 66293 ||||| |||| ||||||||| | |||||| ||||| | || ||||| | ||||| ||| Sbjct 12570 CTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTC 12511 Query 66294 CCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 66353 || ||||| ||| || | | ||||||||| | || | || | || ||||| Sbjct 12510 CCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCA 12451 Query 66354 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 66413 | ||| || ||||||| |||| || ||| | || || | ||| ||| || Sbjct 12450 GTCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCT 12391 Query 66414 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 66473 || | |||| |||||| |||||||| | || || || | |||||| | Sbjct 12390 GGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGT 12331 Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 66533 || || | || || ||||| |||||| || | | | ||| ||||||| || | Sbjct 12330 GTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGCT 12271 Query 66534 TCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || ||||| ||| | ||||| || | || ||||| | | ||||| |||||||| Sbjct 12270 TCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTTC 12212 Query 66593 AACGATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAAT 66651 || | ||||||| ||||| || ||| |||||| |||||| ||||| || |||||| Sbjct 12211 CACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAAT 12153 Query 66652 AGTTGTATGAAAAGTCT 66668 | | ||| ||| ||| Sbjct 12152 AATCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 179 bits (198), Expect = 5e-40 Identities = 562/853 (66%), Gaps = 18/853 (2%) Strand=Plus/Plus Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 |||| ||||| || || | |||||||| || ||||| || || | | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| ||||||| |||||| ||| || || |||||| || |||| | ||| | Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 |||| || || |||||||| |||||| ||| | | | ||||| || ||||| | Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107 ||| ||||||| || |||||| | | ||| | || || |||| ||| || Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGATT- 12796 Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGT--TTAAACATCAAACATGCGAA 36165 | || | | | ||| | || | | || | ||| | | ||||| || || Sbjct 12797 -TGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCAAA 12855 Query 36166 ATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 ||| ||| ||||| || || || | ||||| | ||| || ||||| |||||||| |||| Sbjct 12856 ATCAGCA-TGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 12914 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 36283 | || ||||| |||||||||||||| || | | |||| | | |||||||| | |||||| Sbjct 12915 TAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATTCCC 12973 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCACTGTCATGTATCCACTT 36342 || || || || |||||| ||| || | || || | | || ||||| || Sbjct 12974 TCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAGA-ATTCATCCATTT 13032 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| || |||||||| || || || || || | ||| || Sbjct 13033 AGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCTTCAAAAAGCAT 13092 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 | ||| ||| | || | | |||| ||||||| | || ||| |||| ||| Sbjct 13093 TTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCACTATG 13152 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC-TAGCCTCGGTAATCTGTACTT 36521 || | ||||| | ||||||||| | || | ||||| | || || | || |||| || Sbjct 13153 TATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTATTTGTATTT 13211 Query 36522 CTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 || | | ||||| | |||| || ||||| | || || || ||||| || ||||| || Sbjct 13212 CTCTGAGAAAATT-TACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAAT 13270 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT--AGTTTATTCCAATCATTGA 36638 || || |||| ||| ||||||| |||||| ||| || || | | ||| || | | Sbjct 13271 GCTAAAACATATTTGATAAAATGTTTTTCAG--GGTCTTTAAGACTTTCCCAGTCTCTAA 13328 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 |||| | | | ||| | |||||| |||||||||||| || ||||||||||||| Sbjct 13329 TATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACA 13388 Query 36699 TATTCCAGATGTC 36711 | ||| ||||| Sbjct 13389 TCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172331051880