Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq46 316 3e-81 seq37 156 6e-33 >seq46 Length=385502 Score = 316 bits (350), Expect = 3e-81 Identities = 1175/1818 (65%), Gaps = 40/1818 (2%) Strand=Plus/Minus Query 78756 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTT 78815 ||| || || || ||||||| ||| |||| || || ||||||||| | || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 78816 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 78875 | | || | | || | | |||||||| |||| |||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 78876 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 78934 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 78935 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTGCCATAA 78991 ||| | || |||| || || | | | |||| ||||| ||| || ||| || | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 78992 TCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 79051 | | | ||| | || |||| |||||| || |||| | | || | ||||| Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 79052 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG-TAAATATTACTGGTATAT 79110 |||| ||||| || || ||||| | ||| || || ||| ||||| || || || Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | || || || || |||||||| | ||| || || |||||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCC 79230 | |||||| ||| | || ||| ||| ||| ||||||| || || |||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 79231 CAAAGATCAGAC---GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCG 79287 ||||| | || || ||| ||| | |||| |||||| |||||| ||||| || Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || |||||||| || ||||| | ||||| || | ||||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | ||| | ||||| ||| || || || | ||||| | | | ||| | Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGAC 13282 Query 79408 TCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || |||| ||| ||| | ||||| ||| || | ||||||| ||||| || | Sbjct 13281 TCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 79526 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 79527 AATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA 79586 |||||||| | |||||| || || || || || |||| || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 79587 TCGTCCATCTATT-------ACAAACATGTTCAACGCGAC-AGATGCCAGATTACAAACG 79638 |||| |||| |||||| | | || || | ||| ||||||||||||||| Sbjct 13102 -CGTCTTGTTATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACG 13045 Query 79639 GCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATG 79698 || || || | ||| | || | || ||||||||||| | |||||| | ||| Sbjct 13044 GCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATA 12985 Query 79699 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGA 79758 || || ||||||| |||||||| || | || ||||| |||||| ||| || || Sbjct 12984 GTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGT 12925 Query 79759 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTAT 79817 || || || ||||| |||| | | || ||| | | || | || || || | Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCTGCGCTTTCATCGT 12866 Query 79818 AGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA 79877 | | | || | | || || | | ||||| | || || || ||||| Sbjct 12865 TTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCCCA 12806 Query 79878 AACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT 79937 |||||| | ||||| ||||| || || ||||| | | ||| ||| | |||||| Sbjct 12805 AACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCT---TGATCCTT 12749 Query 79938 T---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 | |||| | ||| || |||||||||| ||| || || ||| ||||| | ||| Sbjct 12748 TTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCT 12689 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 ||| || || || ||| || ||| || | ||| | | || |||| ||||| Sbjct 12688 CATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCA 12629 Query 80055 CGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCT 80114 ||||||||| || || || || | || || || ||| || ||||| || || || Sbjct 12628 CGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCT 12569 Query 80115 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCC 80174 ||| |||| ||||||||| | |||||| ||||| | || ||||| | ||||| ||||| Sbjct 12568 AGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCCC 12509 Query 80175 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 80234 ||||| ||| | | | ||||||||| | || | || | || ||||| | Sbjct 12508 TCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCAGT 12449 Query 80235 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATC--- 80291 ||| || ||||||| |||| || ||| | || || | ||| ||| || Sbjct 12448 CTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCTGG 12389 Query 80292 AATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 80351 |||| || |||| |||||| |||||||| | || || || | |||||| | Sbjct 12388 AATCCTG---AGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAG 12332 Query 80352 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 80411 || || | || || ||||| |||||| || | | | ||| ||||||| || | Sbjct 12331 TGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGC 12272 Query 80412 TTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTT 80470 ||| ||||| ||| | ||||| || | || ||||| | | ||||| ||||||| Sbjct 12271 TTCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTT 12213 Query 80471 CAACGATCTTGTTATTTATTTTCAACAAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAA 80529 | || | ||||| | ||||| || ||| || ||| |||||| ||||| || ||||| Sbjct 12212 CCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAA 12154 Query 80530 TAGTTGTATGAAAAGTCT 80547 || | ||| ||| ||| Sbjct 12153 TAATCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 156 bits (172), Expect = 6e-33 Identities = 584/898 (65%), Gaps = 46/898 (5%) Strand=Plus/Plus Query 49639 TGATTATCTTC-TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAA 49697 |||| ||||| |||| ||| ||||| |||| ||||| || || | |||||||| Sbjct 12527 TGATCATCTTGGTTGAC-CATGACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCGAA 12585 Query 49698 AAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATT 49757 || ||||| || || | | ||| || ||||| |||| || ||||||| ||| || Sbjct 12586 GAAGTTAGTCTTGCCCTGGAGTGAAATGAGGTCCATCCAATCGAAAGGATTGGAAACTTT 12645 Query 49758 ATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGT 49817 || |||||| || |||| | ||| ||||| || || |||||||| |||||| Sbjct 12646 GTAGATTTTTGGAACATCCAAGGCGAAAAGTAATCTGTCAGCAACAAATTCAATATATTG 12705 Query 49818 TTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTC 49877 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | Sbjct 12706 GGCCATAAGTCTCGAGTTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGAAAGTT 12765 Query 49878 TTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT- 49936 | ||| | || || |||| ||| || || | ||||| ||| Sbjct 12766 TCTTTCGACTTCAACAGCTTCTGATATGAT-----------TTGTTGCACTCTAGGGACT 12814 Query 49937 -GCAAT--AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTC 49985 | ||| |||| | ||| | | ||||| || ||||| ||| || || || || Sbjct 12815 GGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCAAAATCAGCA-TGTAGGCCTTC 12873 Query 49986 GTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 50045 || | ||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||| Sbjct 12874 ATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAG 12933 Query 50046 CCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAA 50104 |||||| || | | |||| | |||||||| | ||||| || || || || ||| Sbjct 12934 CCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATTCCCTCGACAGCACAGAATCCAA 12992 Query 50105 CAAGTCTCTCTCCATAAC-TGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 50163 || ||| || | || | || | | || ||||| || ||||| || |||||| Sbjct 12993 TAATTCTTTCAGCGAAAGATCGCTCAGA-ATTCATCCATTTAGTTGCCCATTCTGCCTTC 13051 Query 50164 TTTTTTACACAAGGCATCGTTTCTA----TGGCATTAAAGAGATAGtttttttCATTACT 50219 || || || || || | | | || | ||| || | ||| ||| | Sbjct 13052 TTCTTAACT----GCTTCAATATGAGAAATTGCTTCAAAAAGCATTTGGCGTTCTTTAAT 13107 Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 || | | ||| |||| || | || ||| |||| ||| || | ||||| | Sbjct 13108 TTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCACTATGTATTTGCTCAATAGA 13167 Query 50280 CATCTGAAATCCGTAGAAACATC-TAGCCTCGGTAATCTGCACTTCTGT-ACAAAATCGT 50337 ||| ||||| | || | ||||| | || || | || || | |||| | | ||||| | Sbjct 13168 CATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTATTTGTATTTCTCTGAGAAAATT-T 13225 Query 50338 TCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 50397 | || || ||||| | || || || ||||| || ||||| || || || |||| ||| Sbjct 13226 ACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTG 13285 Query 50398 ATAAAATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATAT 50455 |||||||||||||| |||| || || | | ||| || | ||||| | | | || Sbjct 13286 ATAAAATGTTTTTC--AGGGTCTTTAAGACTTTCCCAGTCTCTAATATCATGACTCAGAT 13343 Query 50456 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 | | |||||| |||||||||||| || |||||||||||||| ||| ||||| Sbjct 13344 CAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACATCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268288233480