Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq37 188 7e-43 >seq37 Length=17717 Score = 188 bits (208), Expect = 7e-43 Identities = 504/753 (67%), Gaps = 37/753 (5%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||| | ||||| ||||| ||||||||||| || || | ||||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 13642 CCATAAAATCAAATGGATTTATTGACA---TAAACACTTTATCA-CAACCTAGTTCTAAT 13697 |||| |||| || ||||| || | | | | ||| | || || || | || Sbjct 12618 CCATCCAATCGAAAGGATTG---GAAACTTTGTAGATTTTTGGAACATCCAAGG-CGAAA 12673 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTAT 13756 |||||||| ||||||| ||| ||||||||||| | ||| || || | | |||||||| || Sbjct 12674 AGTAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAAT 12732 Query 13757 TAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTAT 13816 || | ||||||| || | ||| | | |||| | ||||| ||| ||| Sbjct 12733 AAGATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATAT 12792 Query 13817 AATAATTGTAATAATCTCATTAGAAGGAG-GATATTTTAGATGT-------TTAAAAATT 13868 || |||| | ||| | ||| | || |||| || | ||| | | | Sbjct 12793 GAT--TTGTTGCACTCT------AGGGACTGGTAATTTAAATTTAAGGGCCTTATATACT 12844 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| Sbjct 12845 AAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTG 12904 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 | ||| ||||| | ||| |||||||| | |||||| |||||| ||| || ||||| Sbjct 12905 AGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAAT 12964 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 | |||||||| || ||| || | || | || ||| | || ||| | ||| Sbjct 12965 AGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAGAATTC 13024 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 |||||||| | |||||||| | || || |||| || || ||| || Sbjct 13025 ---ATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCT 13081 Query 14109 TTAAATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 | ||| | || | | | |||||| | | || ||| |||||||||||| ||| Sbjct 13082 TCAAAAAGCATTTGGCGT-TCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATA 13140 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCAT-CTAGCTTCCG 14226 ||||| ||||| | || |||| || |||||| ||||| | ||| || ||||||| Sbjct 13141 AGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATA-CATCCTGGCTTCCG 13199 Query 14227 ACCATTGTACT--TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 ||||| | || ||| ||||| || | ||||| ||||| |||| ||||||||||| Sbjct 13200 GTATTTGTATTTCTCTGAG-AAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACT 13257 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14317 || ||||| ||||| || | | ||| ||||| Sbjct 13258 TGCAGCAAAGAATGCTAAAACATATTTGATAAA 13290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727658193800