Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq37 181 1e-40 >seq37 Length=17717 Score = 181 bits (200), Expect = 1e-40 Identities = 506/756 (67%), Gaps = 43/756 (6%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||| | ||||| ||||| || |||||||| || || | ||||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 13430 CCATAAAATCGAATGGATTTG-----TTGACATAAACACTTTATCACAACCTAGTTCTAA 13484 |||| ||||||| ||||| | ||| || | ||| ||| || || | || Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTG---TAGATT-TTTGGAACATCCAAGG-CGAA 12672 Query 13485 TAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTA 13543 | |||||| ||||||| ||| ||||||||||| | ||| || || | | |||||||| | Sbjct 12673 AAGTAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAA 12731 Query 13544 TTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA 13603 | || | ||||||| || | | ||| | | |||| | ||||| || || Sbjct 12732 TAAGATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATA 12791 Query 13604 TAATAATCTTAATAATGTCATTAGAAGGAG-GATATTTTAGATGT-------TTAAAAAT 13655 | || | || || | | ||| | || |||| || | ||| | | Sbjct 12792 TGATT-------TGTTG-CACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATAC 12843 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 |||||| ||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| Sbjct 12844 TAAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGT 12903 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAA 13774 | ||| ||||| | ||| |||||||| | |||||| |||||| | || | | || |||| Sbjct 12904 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAA 12962 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 | | |||||||| || ||| || | || | || ||| | || ||| | | Sbjct 12963 ATAGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAGAAT 13022 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 | |||||||| | |||||||| | || || |||| || || |||| Sbjct 13023 T---CATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTG 13079 Query 13895 CATTGAATAA--ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 13952 | || || || || | | | |||||| | | || ||| |||||||||||| Sbjct 13080 C-TTCAAAAAGCATTTGGCGT-TCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGA 13137 Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT-CTAGCTT 14011 ||| ||||| ||||| | || |||| || |||||| ||| || |||| || |||| Sbjct 13138 ATAAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCAT-AATACATCCTGGCTT 13196 Query 14012 CTGACCATTGTA--CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 | | ||||| ||| ||| ||||| || ||||||||||||| ||||||||||||| Sbjct 13197 CCGGTATTTGTATTTCTCTGAG-AAAAT-TTACTGCCAAGTTTTCCATAACAATACCATC 13254 Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14105 ||| || ||||| ||||| || | | ||| ||||| Sbjct 13255 ACTTGCAGCAAAGAATGCTAAAACATATTTGATAAA 13290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588459005480