Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq46 260 2e-64 seq37 158 2e-33 >seq46 Length=385502 Score = 260 bits (288), Expect = 2e-64 Identities = 1155/1812 (64%), Gaps = 28/1812 (2%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| || ||||||||||||| ||| |||| || |||||||||||| | || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | | | | | || | || || || |||| || || |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 71018 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTGCAATAA 71074 ||| | || |||| || || | | | |||| ||||| ||| || |||||| | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | | | || | || |||| |||||| || |||| | | || | ||| | Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG-TAAATATTACTGGTATAC 71193 |||| ||||| || || ||||| | ||| ||||| ||| ||||| || || | Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 71194 GGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 71253 || || | ||| || || || |||||||| | ||| || || || ||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 71254 ACCAATAGACTATTTCTAAGACCATGTGATCGGA--TTTTATCTTTTAGAGATTCCCAAT 71311 | |||| | ||| | || ||||| | | ||| || ||||||| || || ||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATAT--TTGGAAATTCTATCTTTAAGTGAATCCCAAT 13464 Query 71312 TCCAAAGATCCGA---TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG 71368 ||||| | || ||| ||| || || ||||| | Sbjct 13463 CACAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTG 13404 Query 71369 CGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCT 71428 | || || |||||| ||||||||||| | |||||| || || ||||| || || | Sbjct 13403 CAGGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGT 13344 Query 71429 CTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGC 71488 | | ||| ||||||| ||| || || || | ||||| | | | ||| || Sbjct 13343 CAAGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCG 13284 Query 71489 TATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCG 71547 || |||| ||| ||| | ||||| ||| || | ||||||| |||||| || Sbjct 13283 ACTCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCC 13225 Query 71548 ATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 71607 | || | || || ||| || ||| | |||| || || |||||| || || Sbjct 13224 AATGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCA 13165 Query 71608 ATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA 71667 || |||||||| | ||| || || || || || || |||| || ||||||| Sbjct 13164 ATTATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCA 13105 Query 71668 AATCTCCC---ATCTATTACAA-ACACGTTC-AAGGC-AACAGATGCCAGATTACAAACG 71721 || || || | | ||| | || || ||||| || ||| ||||||||||||||| Sbjct 13104 AACGTCTTGTTATTTTTGTCAACAAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 13045 Query 71722 GCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATG 71781 || || || | ||| | || | || ||||||||||| | ||||| | || Sbjct 13044 GCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATA 12985 Query 71782 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGA 71841 || || ||||||| |||||||| || | || ||||| |||||| |||||| || Sbjct 12984 GTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGT 12925 Query 71842 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTAT 71900 || || || ||||| |||| | | || ||| | | || | || || || | Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCTGCGCTTTCATCGT 12866 Query 71901 ATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA 71960 ||| | | || | | || || | | ||||| | || || || ||||| Sbjct 12865 TTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCCCA 12806 Query 71961 AGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATT 72020 | ||| | ||||| ||||||| ||| ||||| | | ||| ||| ||| | | Sbjct 12805 AACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCTTGATCCTTTTC 12746 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 |||| | ||| || |||||||||| ||| || || ||| ||||| | ||| Sbjct 12745 AACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCTCAT 12686 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||| || || || ||| || ||| || | ||| | | || |||| |||||||| Sbjct 12685 CTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCACGG 12626 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 |||||| || || || || | || || || ||| || ||||| || || ||||| Sbjct 12625 TTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGC 12566 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 |||| ||||||||| | |||||| ||||| | || ||||| ||||| ||||| Sbjct 12565 AGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCCCTCG 12506 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTT 72320 ||||| ||| | | | |||||| || | || | || | || ||||| | || Sbjct 12505 AATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCAGTCTT 12446 Query 72321 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 | || ||||||| |||| || ||| | || || | ||| ||| || || Sbjct 12445 ACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCTGGAAT 12386 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440 | |||| |||||| |||||||| | || || || | |||||| | || || Sbjct 12385 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGTGTGGG 12326 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 72500 | || || ||||| |||||| || | | | ||| ||||||| || | ||| || Sbjct 12325 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGCTTCAAT 12266 Query 72501 ATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 ||| ||| | || || || | || ||||| | | |||||| |||||||| || | Sbjct 12265 ATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTTCCACAA 12207 Query 72560 TCTTGTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 ||||| | ||||| || ||| |||||| |||||| ||||| || ||||||| | Sbjct 12206 CTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAATAATCA 12148 Query 72619 TATGAAAAGTCT 72630 ||| ||| ||| Sbjct 12147 TATTCAAAATCT 12136 >seq37 Length=17717 Score = 158 bits (174), Expect = 2e-33 Identities = 555/847 (66%), Gaps = 30/847 (4%) Strand=Plus/Plus Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 |||| ||||| || || | |||||||| || |||||||| || | | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 |||| |||| || ||||||| ||| || || |||||| || |||| | ||| | Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 |||| || || | ||||| |||||| ||| | | | ||||| || ||||| | Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 ||| ||||||| || |||||| | | ||| | || || |||| ||| || Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGATT- 12796 Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT--TTAAACATCAAACATGCGAA 42072 | || | | | ||| | || | | || | ||| | | ||||| || || Sbjct 12797 -TGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCAAA 12855 Query 42073 ATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 ||| ||| || || || ||||| | ||||| | ||| || ||||| |||||||| |||| Sbjct 12856 ATCAGCA-TGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 12914 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCT 42190 | || ||||| |||||||||||||| || | | |||| | | |||||||| | ||||| Sbjct 12915 TAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATTCCC 12973 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCACTGTCATGTATCCACTT 42249 || || || || |||||| ||| || | | | || | | || ||||| || Sbjct 12974 TCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAG-AATTCATCCATTT 13032 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT----TCTATGGCATTAAAGA 42305 ||||| || |||||||| || || || || | || || | ||| | Sbjct 13033 AGTTGCCCATTCTGCCTTCTTCTTAAC----TGCTTCAATATGAGAAATTGCTTCAAAAA 13088 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | | ||| ||| | || | | |||| |||| || | || ||| |||| Sbjct 13089 GCATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCAC 13148 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT-CTGGCCTCGGTAACCTGT 42424 ||| || | ||||| | ||| ||||| | || | |||| ||||| || | | ||| Sbjct 13149 TATGTATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTATTTGT 13207 Query 42425 ACTTCTGT-ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 | |||| | | ||||| | | || || ||||| | || || || ||||| || ||||| Sbjct 13208 ATTTCTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAA 13266 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT--AATTTATTCCAATCA 42541 || || || |||| ||| ||||||| |||||| ||| || | | | ||| || Sbjct 13267 GAATGCTAAAACATATTTGATAAAATGTTTTTC--AGGGTCTTTAAGACTTTCCCAGTCT 13324 Query 42542 TTGATATCTTTAGATATATCTACTTCTTC--TACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | ||||| | | | ||| | |||||| || | ||||||||||||||| ||||||| Sbjct 13325 CTAATATCATGACTCAGATCAATTTCTTCAGTAAC--CCAAAATGATGCTTCGGCCTTTT 13382 Query 42600 TATACAT 42606 ||||||| Sbjct 13383 TATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138721813320