Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 104 1e-17 seq45 91.5 9e-14 >seq6 Length=322908 Score = 104 bits (114), Expect = 1e-17 Identities = 168/240 (70%), Gaps = 14/240 (6%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| | | ||| || || ||||| || ||||| || || ||||||||||||| Sbjct 207085 CACCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAG 207026 Query 33201 ACAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 || ||||| || ||||||||||||||| ||| || ||||| || || || Sbjct 207025 ----ATAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCA 206970 Query 33257 GTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || ||||| || || || | | | ||| ||||| | | ||| || || Sbjct 206969 GGAGGAATGCCCTCCTTATCCTGGATCTTTGCC---TTTACATTCTCAATAGTATCCGAA 206913 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||| ||| |||| || || || || || || |||||||| || ||||||||||| ||| Sbjct 206912 GGTTCAACTTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATCTTT 206853 >seq45 Length=133594 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT---- 33212 ||| || ||||| || || ||||||||||| || ||||||||||| | ||||| Sbjct 55048 CAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGA----GAGTTCTAC 54993 Query 33213 GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 || || ||||| ||||| ||| || |||||||| || || | ||||| || || | Sbjct 54992 CATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCT 54933 Query 33273 TTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 | || |||| || ||| ||| | ||| || || || | ||| |||| ||| Sbjct 54932 TATCTTGAATC-TTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTG 54874 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| | ||| || |||||||| ||||| Sbjct 54873 ATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/223 (69%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT---- 33212 ||| || ||||| || || ||||||||||| || ||||||||||| | | ||| Sbjct 54820 CAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGA----GGGTTCTAC 54765 Query 33213 GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 || || ||||||||||| ||| || |||||||| || || | || || ||||| | Sbjct 54764 CATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCT 54705 Query 33273 TTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329 | || |||| ||| || || | | || || || |||| ||| |||| || Sbjct 54704 TATCTTGAATCTTTGCC---TTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAG 54648 Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || ||||| || | ||| || || ||||| ||||| || Sbjct 54647 TGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777378549186