Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016-
03-17] 57 sequences; 8,973,200 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq45 86.0 5e-12
>seq45
Length=133594
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053
||||| || ||||||| ||||| |||||||| ||||||||||| | |||| || |
Sbjct 55050 CTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCA 54991
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
|| || |||||||| || ||| | || | | |||||||| || | || || ||
Sbjct 54990 TCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTA 54931
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| ||| ||| || || | ||| | ||| ||| || ||||| || |||
Sbjct 54930 TCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATG 54871
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || || ||||| || ||||| ||||| |||||
Sbjct 54870 GTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053
||||| || ||||||| ||||| |||||||| ||||||||||| | ||| || |
Sbjct 54822 CTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCA 54763
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
|| || ||||| || || ||| | || | | |||||||| || | ||||| ||
Sbjct 54762 TCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTA 54703
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| ||| ||| || || | | | || ||| |||||| ||||| || ||
Sbjct 54702 TCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATA 54643
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211
|| || || ||||| || || |||||||| ||||| ||
Sbjct 54642 GTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419586908518017
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |