Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-29 >seq15 Length=130012 Score = 141 bits (156), Expect = 1e-29 Identities = 194/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| || |||||||||||||| ||||| |||||||| ||| Sbjct 88406 GCCAAGCGTCATCGCAAGGTTCTCCGTGATAACATCCAAGGTATCACAAAGCCAGCCATC 88347 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | ||||| || || ||| | || | ||| |||| ||||| | Sbjct 88346 CGTCGTCTCGCACGTAGAGGTGGTGTTAAACGTATTTCCGCCTTGATCTACGAAGAAGTC 88287 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| || ||| ||| | ||||||| || | |||||| | ||| || ||| Sbjct 88286 AGAGGTGTATTAAAGGCATTCTTGGAGACCGTCATTAAGGATGCTGTTACCTACACTGAG 88227 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || | |||||||||||| || | |||||| | || |||| | || | |||||| Sbjct 88226 TATGCCAGACGTAAGACTGTTACTGCTATGGATGTAGTTCATGCTCTTAAGAGACAAGGC 88167 Query 16673 CGTAAGA---TTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 88166 ---AAGACTCTATACGGTTTTGGTGGTTAA 88140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075147884501