Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq37 111 2e-19 >seq37 Length=17717 Score = 111 bits (122), Expect = 2e-19 Identities = 342/512 (67%), Gaps = 24/512 (5%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | ||||| |||||||| || || ||||| || | | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| |||| || ||||| | ||| | ||||| | | ||| | | | || Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA-TTCATACCGATCAAT 21364 |||| || || |||||||| |||||||| ||| || || | | |||||||| || | Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAATAAGA 12736 Query 21365 TTTACAGGAAGAGCTTTTGTCAAA-AAAGATT-TTTCTATAGAGACGGCTTCAACAATTA 21422 | |||||||||| | |||| |||| || |||| | || ||||| || | Sbjct 12737 TCAACAGGAAGAGAATCA--CAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGA 12794 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAA---TAATTGT-TTAAACATCAAACAT 21478 | | | | |||| | ||| || || || ||| | ||| | | ||||| Sbjct 12795 TTTGTTGCACTCTAG--GGACT--GGTAATTTAAATTTAAGGGCCTTATATACTAAACAG 12850 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||| ||| | |||||||| | || || | ||||||||||||||| | || Sbjct 12851 GCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCA 12910 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAAT 21597 ||||| | ||| | ||||| | |||||| |||| | |||| ||| || ||||| | ||| Sbjct 12911 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAAT 12969 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT-- 21655 ||||| || ||| ||| ||| | || |||| || | |||| | | ||| Sbjct 12970 TCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAA---AGATCGCTCA--GAATTC 13024 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTT-TTCTT 21686 |||||||| |||||||| |||||| ||||| Sbjct 13025 ATCCATTTAGTTGCCCATTCTGCCTTCTTCTT 13056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900421020680