Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq46 304 2e-77 seq37 156 5e-33 >seq46 Length=385502 Score = 304 bits (336), Expect = 2e-77 Identities = 1169/1817 (64%), Gaps = 38/1817 (2%) Strand=Plus/Minus Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 ||| || || || ||||||| ||| |||| || |||||||||||| | || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 | | || | | || | | |||||||| |||| |||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 62211 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 62212 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTGCCATAA 62268 ||| | || |||| || || | | | |||| ||||| ||| || ||| || | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 | | | ||| | || ||||| |||||| || |||| | | || | ||||| Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG-TAAATATTACTGGTATAC 62387 |||| ||||| || || ||||| | ||| || || ||| ||||| || || | Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 62388 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62447 || || | ||| || || || |||||||| | ||| || || || ||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 62448 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62507 | |||||| ||| | || ||| ||| | ||| ||||||| || | ||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 62508 CAAAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCG 62564 ||||| | || || ||| ||||| |||||| ||||| || Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 62565 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 62624 || || |||||| ||||||||||| | || || || || ||||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 62625 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA 62684 | || | ||||| ||| || ||||| | ||||| | | | ||| || Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGAC 13282 Query 62685 TCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62743 || |||| ||| ||| | ||||| ||| || | ||||||| ||||| || | Sbjct 13281 TCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 62744 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62803 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 62804 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62863 |||||||| | ||| || ||| || || || || || | || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 62864 TCGCCCATCTATT-------ACAAACATGTTCAAGGC-AACAGATGCCAGATTACAAACG 62915 || | |||| |||||| | | ||||| || ||| ||||||||||||||| Sbjct 13102 -CGTCTTGTTATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACG 13045 Query 62916 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATA 62975 || || || | ||| | || | || || |||||||| | ||||| | ||| Sbjct 13044 GCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATA 12985 Query 62976 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63035 || || ||||||| |||||||| || | || ||||| |||||| ||| ||||| Sbjct 12984 GTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGT 12925 Query 63036 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 63095 || || || ||||| |||| | | || ||| | | || |||| || Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCTGCGCTTTC--ATC 12868 Query 63096 GATTTGTATCTCCTTTCTC-TTTCGTATAGTGTATACAATCGTTCG--AACTCGTCTCCC 63152 | ||| || | || |||| ||| | | | | ||| || || || ||| Sbjct 12867 GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCC 12808 Query 63153 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63212 ||||||| | |||||| ||||||||||| ||||| | | ||| ||| | |||| Sbjct 12807 CAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCT---TGATCC 12751 Query 63213 TTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63269 || |||| | ||| || |||||||||| ||| || || ||| ||||| | | Sbjct 12750 TTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACAT 12691 Query 63270 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63329 || || || || || ||| || ||| || | ||| | | || |||| ||| Sbjct 12690 CTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGC 12631 Query 63330 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63389 ||||||||||| || || || || | || || || ||| || ||||| || || Sbjct 12630 CACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATAC 12571 Query 63390 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63449 ||||| |||| ||||||||| | |||||| ||||| | ||||| || | ||||| || Sbjct 12570 CTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTC 12511 Query 63450 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 63509 || ||||| ||| | | | ||||||||| | || | || | || ||||| Sbjct 12510 CCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCA 12451 Query 63510 ATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCG 63569 | ||| || ||||||| |||| |||||| | ||||| | ||| ||| || Sbjct 12450 GTCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCT 12391 Query 63570 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 63629 || | |||| |||||| |||||||| | || || || | |||||| | Sbjct 12390 GGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGT 12331 Query 63630 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63689 || || | || || ||||| |||||| || | | | ||| ||||||| || | Sbjct 12330 GTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGCT 12271 Query 63690 TCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || ||||| ||| | ||||| || | || ||||| | | ||||| |||||||| Sbjct 12270 TCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTTC 12212 Query 63749 AACGATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63807 || | ||||||| ||||| || ||| |||||| |||||| ||||| || |||||| Sbjct 12211 CACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAAT 12153 Query 63808 AGTTGTATGAAAAGTCT 63824 | | ||| ||| ||| Sbjct 12152 AATCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 156 bits (172), Expect = 5e-33 Identities = 584/898 (65%), Gaps = 46/898 (5%) Strand=Plus/Plus Query 32983 TGATTATCTTC-TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAA 33041 |||| ||||| |||| ||| ||||| |||| ||||| || || | |||||||| Sbjct 12527 TGATCATCTTGGTTGAC-CATGACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCGAA 12585 Query 33042 AAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATT 33101 || ||||| || || | | ||| || ||||| |||| || ||||||| ||| || Sbjct 12586 GAAGTTAGTCTTGCCCTGGAGTGAAATGAGGTCCATCCAATCGAAAGGATTGGAAACTTT 12645 Query 33102 ATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGT 33161 || |||||| || |||| | ||| ||||| || || || ||||| |||||| Sbjct 12646 GTAGATTTTTGGAACATCCAAGGCGAAAAGTAATCTGTCAGCAACAAATTCAATATATTG 12705 Query 33162 TTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTC 33221 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | Sbjct 12706 GGCCATAAGTCTCGAGTTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGAAAGTT 12765 Query 33222 TTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT- 33280 | ||| | || || |||| ||| || || | ||||| ||| Sbjct 12766 TCTTTCGACTTCAACAGCTTCTGATATGAT-----------TTGTTGCACTCTAGGGACT 12814 Query 33281 -GCAAT--AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTC 33329 | ||| |||| | ||| | | ||||| || ||||| ||| || || || || Sbjct 12815 GGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCAAAATCAGCA-TGTAGGCCTTC 12873 Query 33330 GTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 33389 || | ||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||| Sbjct 12874 ATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAG 12933 Query 33390 CCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||||| || | | | || | | |||||||| | ||||| || || ||| || ||| Sbjct 12934 CCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCCTCGACAGCACAGAATCCAA 12992 Query 33449 TAAGTCTCTCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 33507 ||| ||| || | || |||| || ||||| || ||||| || |||||| Sbjct 12993 TAATTCTTTCAGC-GAAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCCTTC 13051 Query 33508 TTTTTTACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACT 33563 || || || || || | || || | ||| || | ||| ||| | Sbjct 13052 TTCTTAAC----TGCTTCAATATGAGAAATTGCTTCAAAAAGCATTTGGCGTTCTTTAAT 13107 Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 || | | ||| |||| || | || ||| |||| ||| || | ||||| | Sbjct 13108 TTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCACTATGTATTTGCTCAATAGA 13167 Query 33624 CATCTGAAATCCGTAGAAACAT-CTAGCCTCGGTAATCTGTACTTCTGT-ACAAAATCGT 33681 ||| ||||| | || | |||| || || || | || |||| |||| | | ||||| | Sbjct 13168 CATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTATTTGTATTTCTCTGAGAAAAT-TT 13225 Query 33682 TCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 33741 | ||||| ||||| | || || || ||||| || ||||| || || || |||| ||| Sbjct 13226 ACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTG 13285 Query 33742 ATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATAT 33799 ||||||| |||||| ||| || || | | ||| || | ||||| | | | || Sbjct 13286 ATAAAATGTTTTTC--AGGGTCTTTAAGACTTTCCCAGTCTCTAATATCATGACTCAGAT 13343 Query 33800 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTC 33857 | | |||||| |||||||||||| || |||||||||||||| ||| ||||| Sbjct 13344 CAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACATCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946756150120