Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq45 91.5 1e-13 >seq45 Length=133594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| || || || || ||||| | ||||| | ||| | ||| | Sbjct 54605 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 54664 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || |||||| | || || ||||||| || || ||||| || || || ||| Sbjct 54665 TCAGATACTATCGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGAT 54724 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | | || | | || || ||| | || |||| ||||| | || || || Sbjct 54725 CAACAACGTTTGATCTTTGCAGGAAAGCAATTAGAGGATGGTAGAACCCTCTCTGATTAC 54784 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||||| | ||| | || ||||||| || || || Sbjct 54785 AACATTCAAAAAGAGTCTACCTTACATTTAGTATTGAGACTCAGGGGTGG 54834 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || ||||| | ||||| | ||| | || | Sbjct 55064 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCA 55123 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || |||||| | || || ||||||| || || ||||| || || || |||||| Sbjct 55124 GATACTATCGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 55183 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || |||||| | || |||| ||||| || || || ||| Sbjct 55184 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 55243 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || ||| | || | || ||||||||||||| |||| Sbjct 55244 ATTCAAAAAGAGTCCACTTTACACTTAGTATTGAGACTTAGAGGCGGAA 55292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662058953040