Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq37 223 9e-53 >seq37 Length=17717 Score = 223 bits (246), Expect = 9e-53 Identities = 531/777 (68%), Gaps = 37/777 (5%) Strand=Plus/Minus Query 22192 GAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTT 22251 ||| ||||||||||||||||| || |||||||||||||| | || ||||| ||| | Sbjct 13299 GAAAAACATTTTATCAAATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATG 13240 Query 22252 GAGAATCTAGTGACTAATTTTGCATCTGA--AATTCAATACCCAGAGGCCAG-ATGTTTC 22308 || || || | | ||| ||| | || || ||| ||| || || ||||| |||| | Sbjct 13239 GAAAA-CTTGGCAGTAAATTTTC-TCAGAGAAATACAAATACCGGAAGCCAGGATGTAT- 13183 Query 22309 TATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTC------TAT-GAT 22361 |||| | | |||||| ||||| | | || ||||| ||||| ||| ||| Sbjct 13182 TATGCTTTTCAAATGTCTATTGAGCAAATACATAGTGAAACTTATTCACTACTTATTGAT 13123 Query 22362 -GCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCGATT-CGC 22419 | || | ||||| ||| |||||| ||| | ||| || || ||| | | Sbjct 13122 AGATATA-TCACT----GAAATTAAAGAACGCCAA--ATGCTTTTTGAA-GCAATTTCTC 13071 Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 | ||| || || ||||||| |||||||| ||||| ||||||||||| ||| || Sbjct 13070 AT-ATTGAAGCAGTTAAGAAGAAGGCAGAATGGGCAACTAAATGGATGAATTCTGAGCGA 13012 Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTG--GTTGAAGGCATTTTCTTTTCTGG-A 22536 || ||||| ||| | |||||| ||| ||||| || || || ||| | |||||||| | Sbjct 13011 TCTTTCGCTGAAAGAATTATTGGATT--CTGTGCTGTCGAGGGAATTCTATTTTCTGGTA 12954 Query 22537 GCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA 22596 || ||||||||||| |||||||| |||||||||| | ||||||| || || || ||||| Sbjct 12953 GC-TTTTGTGCAATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACATTTTCT 12895 Query 22597 AATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGG 22656 ||||| | |||||||| ||||| || || ||| | |||||||| ||| | ||||| | Sbjct 12894 AATGAACTTATTAGCCGTGATGAAGGCCTACATGCTGATTTTGCCTGTTTAGTATATAAG 12835 Query 22657 AATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | || ||| |||| | ||| | || | | || || || | || ||| Sbjct 12834 GCCCTTA-AATT--TAAATTACCAGTCCCTAGAGTGCAACAAATCATATCAGAAGCTGTT 12778 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 ||| | ||| | ||| |||| || | | || || ||| |||||||| || | Sbjct 12777 GAAGTCGAAAGAAACTTTCTTTGTGATTCTCTTCCTGTTGATCTTATTGGTATGAACTCG 12718 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTC-ACTCGGTTA 22835 | ||| ||||||| |||||||||| || | || | |||| || || | Sbjct 12717 AGACTTATGGCCCAATATATTGAATTTGTTGCTGACAGATTACT--TTTCGCCTTGGATG 12660 Query 22836 TGCAAAGCAT-TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAG 22894 | | || || || || || ||||| || || |||||||| || |||||||| | | Sbjct 12659 TTCCAAAAATCTACAAAGTTTCCAATCCTTTCGATTGGATGGACCTCATTTCACTCCAGG 12600 Query 22895 GAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 | ||||| || ||||||||||| ||||| || ||||| |||| || || || |||| Sbjct 12599 GCAAGACTAACTTCTTCGAAAAGAGAGTCGGAGAATATCAAATGGCTGGAGTCATGG 12543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352648144574