Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq45 93.3 4e-14 >seq45 Length=133594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||||| ||| ||||| ||||||||||||||||| | ||| | |||||| Sbjct 54816 ACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCATCCTCT 54757 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | ||||| ||||| |||| ||||| || || || || || |||||||| || || || Sbjct 54756 AATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATC-TTG 54698 Query 131146 ATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | | | || ||| | | ||| | |||||| | | || | || | || | || || Sbjct 54697 AATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTT 54638 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || | ||| || || ||||||||||| Sbjct 54637 TCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||||| ||| ||||| ||||||||||||||||| | || | |||||| Sbjct 55044 ACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 54985 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || ||||| |||| ||||| || || || || || || || || || || || Sbjct 54984 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTATC-TTG 54926 Query 131146 ATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | | | || ||| | | ||| | ||||| | | ||| | || | || | ||| || Sbjct 54925 AATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATGGTCTT 54866 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || | ||| || |||||||||||||| Sbjct 54865 TCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 ||||| |||| || ||||| ||||||||||||||||| | || | |||||| Sbjct 55272 ACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 55213 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || ||||| |||| ||||| || || || || || |||||||| || || || Sbjct 55212 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCT-TG 55154 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | | | ||| | | | | ||| | |||||| | | ||| | || | || | ||| || Sbjct 55153 AATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGATGGTCTT 55094 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || | || || |||||||||||||| Sbjct 55093 TCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012463690880