Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq45 140 2e-28 seq50 136 3e-27 seq6 114 9e-21 seq7 96.9 2e-15 >seq45 Length=133594 Score = 140 bits (154), Expect = 2e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | | ||| || || || | |||| ||| |||||||| ||||||| Sbjct 55294 CATT-CCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAAT 55236 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | | || |||||||||||||| ||||| || | ||||||||||| | Sbjct 55235 CAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAG 55176 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || ||| ||| ||| ||||||| || ||||||| | | Sbjct 55175 GTGGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCT 55116 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || || || || || |||||||| || ||||| |||||||| Sbjct 55115 CAACTTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | | ||| || ||||| | || ||| |||||||| |||||||||| Sbjct 54836 TACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAG 54777 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || |||||||| ||||| ||||| || | ||||||||||| | | Sbjct 54776 AGAGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTG 54717 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || ||| ||| ||| ||||||| || ||||||| | ||||| Sbjct 54716 GAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAA 54657 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || ||||| || || ||||| || || || || |||||||| || Sbjct 54656 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | | ||| || ||||| | || ||| |||||||| |||||||||| Sbjct 55064 TACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAG 55005 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | || |||||||||||||| ||||| || | ||||||||||| | | Sbjct 55004 AGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTG 54945 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || || ||| ||| ||| || |||| | |||||| | |||| Sbjct 54944 GTATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAA 54885 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || |||||||| || || ||||| |||||||| Sbjct 54884 CTTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq50 Length=347251 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 2433 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2374 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2373 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2339 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || | Sbjct 373 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTTTCTC 314 Query 20007 GGTAATATTTAGCCTT 20022 |||||||||| || Sbjct 313 ATCAATATTTAGCTTT 298 >seq6 Length=322908 Score = 114 bits (126), Expect = 9e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||||| | | ||| || || || | |||| |||||| || |||||||||||||| Sbjct 207084 ACCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGA 207025 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | | || || ||||| ||||| ||||| || | || |||||||| | || Sbjct 207024 TAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGG 206965 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || || ||| || ||| ||| ||||||| | |||||| | |||||| Sbjct 206964 AATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAAC 206905 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 ||| ||||| || || || || || | ||||| || || || ||||| |||| Sbjct 206904 TTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATCTTTT 206852 >seq7 Length=1436 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || | Sbjct 455 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTTTCTC 514 Query 20007 GGTAATATTTAGCCTT 20022 |||||||||| || Sbjct 515 ATCAATATTTAGCTTT 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946967316367