Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq46 295 8e-75 seq37 179 5e-40 >seq46 Length=385502 Score = 295 bits (326), Expect = 8e-75 Identities = 1167/1817 (64%), Gaps = 38/1817 (2%) Strand=Plus/Minus Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 ||| || || || ||||||| ||| |||| || |||||||||||| | || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 | | || | | || | | |||||||| |||| |||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 62066 ||| ||||||||||| | || | |||||||| ||||||||||| ||| ||||||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 62067 CTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTGCCATAA 62123 ||| | || |||| || || | | | |||| ||||| ||| || ||| || | Sbjct 13759 CTCACGTA-TATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGA 13701 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 | | | ||| | || ||||| |||||| || |||| | | || | ||||| Sbjct 13700 TATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCG 13641 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG-TAAATATTACTGGTATAC 62242 |||| ||||| || || ||||| | ||| || || ||| ||||| || || | Sbjct 13640 GATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAAT 13582 Query 62243 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62302 || || | | ||| || || || |||||||| | ||| || || || ||||| || | Sbjct 13581 GGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGAT 13522 Query 62303 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62362 | |||||| ||| | || ||| ||| | ||| ||||||| || | ||||||| Sbjct 13521 ATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCA 13462 Query 62363 CAAAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCG 62419 ||||| | || || ||| ||||| |||||| ||||| || Sbjct 13461 CAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCA 13402 Query 62420 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 62479 || || |||||| ||||||||||| | || || || || ||||| || || || Sbjct 13401 GGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCA 13342 Query 62480 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTA 62539 | || | ||||| ||| || ||||| | ||||| | | | ||| || Sbjct 13341 AGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGAC 13282 Query 62540 TCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 62598 || |||| ||| ||| | ||||| ||| || | ||||||| ||||| || | Sbjct 13281 TCGTATGG-TAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 62599 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62658 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 62659 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62718 |||||||| | ||| || ||| || || || || || | || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 62719 TCGCCCATCTATT-------ACAAACATGTTCAATGC-AACAGATGCCAGATTACAAACG 62770 || | |||| |||||| | | || || || ||| ||||||||||||||| Sbjct 13102 -CGTCTTGTTATTTTTGTCAACAAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACG 13045 Query 62771 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 62830 || || || | ||| | || | || || |||||||| | ||||| | || Sbjct 13044 GCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATA 12985 Query 62831 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 62890 || || ||||||| |||||||| || | || ||||| |||||| ||| ||||| Sbjct 12984 GTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGT 12925 Query 62891 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 62950 || || || ||||| |||| | | || ||| | | || |||| || Sbjct 12924 GTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAA-GTTTCTGCGCTTTC--ATC 12868 Query 62951 GATTTGTATCTCTTTTCTC-TTTCGTATAGTGTATACAATCGTTCG--AACTCGTCTCCC 63007 | ||| || || |||| ||| | | | | ||| || || || ||| Sbjct 12867 GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCC 12808 Query 63008 CAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63067 ||||||| | || ||| ||||||||||| ||||| | | ||| ||| | |||| Sbjct 12807 CAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCT---TGATCC 12751 Query 63068 TTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63124 || |||| | ||| || |||||||||| ||| || || ||| ||||| | | Sbjct 12750 TTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACAT 12691 Query 63125 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63184 || || || || || ||| || ||| || | ||| | | || |||| ||| Sbjct 12690 CTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGC 12631 Query 63185 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63244 ||||||||||| || || || || | || || || ||| || ||||| || || Sbjct 12630 CACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATAC 12571 Query 63245 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 63304 ||||| |||| ||||||||| | |||||| ||||| | || ||||| | ||||| ||| Sbjct 12570 CTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTC 12511 Query 63305 CCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 63364 ||| ||||| ||| | | | ||||||||| | || | || | || ||||| Sbjct 12510 CCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCA 12451 Query 63365 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 63424 | ||| || ||||||| |||| || ||| | || || | ||| ||| || Sbjct 12450 GTCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCT 12391 Query 63425 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 63484 || | |||| |||||| |||||||| | || || || | |||||| | Sbjct 12390 GGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGT 12331 Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63544 || || | || |||||||| |||||| || | | | ||| ||||||| || | Sbjct 12330 GTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGCT 12271 Query 63545 TCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || ||||| ||| | ||||| || | || ||||| | | ||||| |||||||| Sbjct 12270 TCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTTC 12212 Query 63604 AACGATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63662 || | ||||||| ||||| || ||| |||||| |||||| ||||| || |||||| Sbjct 12211 CACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAAT 12153 Query 63663 AGTTGTATGAAAAGTCT 63679 | | ||| ||| ||| Sbjct 12152 AATCATATTCAAAATCT 12136 >seq37 Length=17717 Score = 179 bits (198), Expect = 5e-40 Identities = 562/853 (66%), Gaps = 18/853 (2%) Strand=Plus/Plus Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 |||| ||||| || || | |||||||| || ||||| || || | | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 |||| ||||||| ||||||| ||| || || |||||| || |||| | ||| | Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAAGTA 12677 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 |||| || || |||||||| |||||| ||| | | | ||||| || ||||| | Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 ||| ||||||| || |||||| | | ||| | || || |||| ||| || Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGATT- 12796 Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT--TTAAACATCAAACATGCGAA 32668 | || | | | ||| | || | | || | ||| | | ||||| || || Sbjct 12797 -TGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCAAA 12855 Query 32669 ATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 ||| ||| ||||| || || || | ||||| | ||| || ||||| |||||||| |||| Sbjct 12856 ATCAGCA-TGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 12914 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 32786 | || ||||| |||||||||||||| || | | |||| | | |||||||| | |||||| Sbjct 12915 TAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATTCCC 12973 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCATGTATCCACTT 32845 || || || || |||||| ||| || | || |||| || ||||| || Sbjct 12974 TCGACAGCACAGAATCCAATAATTCTTTCAGC-GAAAGATCGCTCAGAATTCATCCATTT 13032 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| || |||||||| || || || || || | ||| || Sbjct 13033 AGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCTTCAAAAAGCAT 13092 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | ||| ||| | || | | |||| ||||||| | || ||| |||| ||| Sbjct 13093 TTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATAAGTTTCACTATG 13152 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT-CTAGCCTCGGTAATCTGTACTT 33024 || | ||||| | ||||||||| | || | ||| || || || | || |||| || Sbjct 13153 TATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTCCGGTATTTGTATTT 13211 Query 33025 CTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33083 || | | ||||| | |||| || ||||| | || || || ||||| || ||||| || Sbjct 13212 CTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAAT 13270 Query 33084 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGA 33141 || || |||| ||| ||||||| |||||| ||| || || | | ||| || | | Sbjct 13271 GCTAAAACATATTTGATAAAATGTTTTTC--AGGGTCTTTAAGACTTTCCCAGTCTCTAA 13328 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 |||| | | | ||| | |||||| |||||||||||| || ||||||||||||| Sbjct 13329 TATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACA 13388 Query 33202 TATTCCAGATGTC 33214 | ||| ||||| Sbjct 13389 TCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631548537200