Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq37 131 2e-25 >seq37 Length=17717 Score = 131 bits (144), Expect = 2e-25 Identities = 488/745 (66%), Gaps = 35/745 (5%) Strand=Plus/Plus Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA-TTCATTCCTAGAA 92978 |||||| ||||| |||||||| || || || | ||| || || | | ||||| || | || Sbjct 12676 TAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAATAA 12734 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTT-TCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| |||| || |||||| || | |||| | |||| |||||| | | Sbjct 12735 GATCAACAGGAAGAGAATCACA-AAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATG 12793 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTT---TTGTACGACATAATTGTACATTAAGCAC 93094 |||| | |||||| |||| ||| || | | | | || ||| ||| || Sbjct 12794 ATTTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATA-TAC--TAAACAG 12850 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 ||||| || | ||||| ||||| || || || | ||||| ||||| | || Sbjct 12851 GCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCA 12910 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | ||||| ||||| || |||||||| |||| | ||| ||||||||||| | || Sbjct 12911 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATT 12970 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG---CGGAATTACTGCTG 93271 || || || || ||| | | ||| | ||| || ||| | | ||||| Sbjct 12971 CCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGCTCAGAATTC------ 13024 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAA----TACAAGGTAGTGTTTCGATAGC 93327 |||||||| ||||| || || || ||||||| | ||| | | | || || Sbjct 13025 ATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATAT-GAGAA---ATTGC 13080 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAA 93385 | ||| || | || || | ||| || || || ||| |||| || | || ||| Sbjct 13081 TTCAAAAAGCATTTGGCGTTCTTT--AATTTCAGTGATATATCTATCAATAAGTAGTGAA 13138 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC-TAGCTTC 93444 || ||||| ||| | | ||| || | ||||| || | || | ||||| | ||||| Sbjct 13139 TAAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATA-ATACATCCTGGCTTC 13197 Query 93445 CGTGATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 || || || | |||| ||||||||| | || | | ||||| | || |||||||| Sbjct 13198 CGGTATTTGTATTTCTCTGAGAAAATTTA-CTGCCAAGTTTTCCATAACAATACCATCAC 13256 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 ||| ||||| || || || | || || ||||||||||| ||| |||||||| | | Sbjct 13257 TTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTCTTTAAGACTTT 13316 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||| || | ||| | ||||| | |||||| | |||||| |||||||| | Sbjct 13317 CCCAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGG 13376 Query 93624 CTTTTTTGTACATATCCCATATGTC 93648 | ||||| ||||| ||| ||||| Sbjct 13377 CCTTTTTATACATCGACCAAATGTC 13401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860403236680