Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq45 113 4e-20 seq6 100 2e-16 >seq45 Length=133594 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | |||||||| |||||||||| ||||| |||||||||||||||||||| Sbjct 54837 ATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCA 54778 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | ||| || | ||| || || || |||| | ||| ||||| || || Sbjct 54777 GAGAGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 54718 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||||| || | | || | || || | | ||| Sbjct 54717 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCA 54658 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| ||| || |||||||||||||| Sbjct 54657 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | |||||||| |||||||||| ||||| |||||||||||||||||||| Sbjct 55065 ATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCA 55006 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | | ||| || | |||||| || || |||| | ||| ||||| || || Sbjct 55005 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 54946 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||||| || | | |||| || || | | || Sbjct 54945 GGTATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCA 54886 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| ||| || || ||||||||||| Sbjct 54885 ACTTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 114146 TTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTT 114205 |||||| | ||||| | |||||||| ||||| |||| || || |||||||||||||| Sbjct 55298 TTTACA--TTCCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTT 55241 Query 114206 GTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTG 114265 |||||| | ||| | | ||| || | |||||| || || |||| | ||| ||||| Sbjct 55240 GTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTG 55181 Query 114266 GTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGT 114325 || || ||||| ||||| || || ||||||| || | | || | || || | Sbjct 55180 ATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGA 55121 Query 114326 GGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || | || | || || || |||| || || || ||||||||||| Sbjct 55120 AGGCTCAACTTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 >seq6 Length=322908 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||||||| ||||| || | || || || || || || |||||||| | ||| | Sbjct 207074 AGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGATAGAGTTCTG 207015 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||| || ||||| |||| | ||||||||| || ||||||||||| || Sbjct 207014 CCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCC 206955 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || |||||| |||| | |||| || || | | ||| || |||| || Sbjct 206954 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAACTTCCAATGTG 206895 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || || |||||||| |||||||| ||||| Sbjct 206894 ATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCAT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134108137884