Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq45 107 2e-18 seq6 82.4 8e-11 >seq45 Length=133594 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || || |||||||||||||||||||| | || ||| | | || || Sbjct 54816 ACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCATCCTCT 54757 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | ||||| || ||| | || | || || || || || ||||||||||| || ||||| Sbjct 54756 AATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGA 54697 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| ||| ||| | ||||| | || ||||| | ||| | ||||| Sbjct 54696 ATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTT 54637 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || |||||||| || || ||||| ||||| || Sbjct 54636 CCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||||||||||||||| | || || | | || || | || || || Sbjct 55260 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 55201 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || || ||||||||||| || ||||| || ||| ||| Sbjct 55200 GCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGCCTTA 55141 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || ||||||| ||| | |||||| || ||||| || Sbjct 55140 ACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGATGGTCTTTCCTGTCAAGGTC 55081 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 55080 TTAACGAAAATCTGCAT 55064 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || || |||||||||||||||||||| | || || | | || || Sbjct 55044 ACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 54985 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || || || || || || || || || || ||||| Sbjct 54984 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTATCTTGA 54925 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| || ||| | |||||| | || ||||| | ||| | |||||| Sbjct 54924 ATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATGGTCTTT 54865 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || |||||||| ||||| Sbjct 54864 CCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || |||||||| | | || | | ||||| | ||||| || Sbjct 207053 GTGGACTCCTTCTGGATATTGTAATCAGATAGAGTTCTGCCATCTTCCAATTGCTTTCCA 206994 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||| || || |||||||| || || || || || || ||| |||| Sbjct 206993 GCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTT 206934 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || ||||| | || | |||||| || || | |||| Sbjct 206933 ACATTCTCAATAGTATCCGAAGGTTCAACTTCCAATGTGATGGTCTTCCCTGTTAGAGTT 206874 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || ||||||||||| || Sbjct 206873 TTAACAAAAATTTGCATCTT 206854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644444003080