Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq45 82.4 8e-11 >seq45 Length=133594 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||||||||| | | ||||| |||||||||||||| || | ||| | || Sbjct 55048 CAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 54989 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 ||| | |||||| || | | |||| | ||| ||||| || || ||||| || || || || Sbjct 54988 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTATC 54929 Query 138522 GGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| | |||| |||| | || | || || | | ||| || || | || | | Sbjct 54928 -TTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATGG 54870 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || |||| ||| || || ||||||||||| Sbjct 54869 TCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262046413040