Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq45 149 4e-31 seq6 132 3e-26 >seq45 Length=133594 Score = 149 bits (164), Expect = 4e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || |||||||| | |||||| |||||||| ||||||||||| | Sbjct 54834 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 54775 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || |||||||| || || || | |||||||| ||||| || |||| Sbjct 54774 AGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 54715 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || |||||||| | ||| || Sbjct 54714 ATTCCTTCCTTATCTTGAATCTTTGC-CTTAACATTCTCGATAGTATCTGAAGGTTCAAC 54656 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || || ||||||| ||| || |||||||| |||||||| Sbjct 54655 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 55290 CCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 55231 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || |||| Sbjct 55230 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 55171 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || |||||||| | || || Sbjct 55170 ATTCCTTCCTTATCTTGAATCTTTGC-CTTAACATTCTCGATAGTATCTGAAGGCTCAAC 55112 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| || ||||||| || || || ||||| |||||| Sbjct 55111 TTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 55063 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || |||||||| | |||||| |||||||| ||||||||||| | Sbjct 55062 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 55003 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 55002 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGT 54943 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || ||| ||||| || || | || || ||||| | || || Sbjct 54942 ATCCCCTCCTTATCTTGAATCTTTGC-CTTAACGTTCTCAATTGTATCTGAAGGCTCAAC 54884 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || |||| ||| || || ||||| |||||| Sbjct 54883 TTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATA 54835 >seq6 Length=322908 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || ||||| || | || || || || || || |||||||| Sbjct 207083 CCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGAT 207024 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || ||||| | |||||||||||||| || ||| Sbjct 207023 AGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 206964 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || || ||||| ||| ||| | || |||||||| | ||| || Sbjct 206963 ATGCCCTCCTTATCCTGGATCTTTGCCTTT-ACATTCTCAATAGTATCCGAAGGTTCAAC 206905 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || ||||| |||||||| |||||||||||||| ||| Sbjct 206904 TTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATCTTT 206853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391751724245