Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq45 107 2e-18 seq6 95.1 1e-14 >seq45 Length=133594 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | || ||| || ||||||| ||||||||||||||||| |||||||| Sbjct 55062 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 55003 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| |||| |||||||| || ||||||| || || ||||| || ||| Sbjct 55002 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGT 54943 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| | | ||| | | || ||| | | || | || || | | ||| || Sbjct 54942 ATCCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAAC 54884 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||| || || ||||||||||| Sbjct 54883 TTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | || ||| || ||||||| ||||||||||||||||| |||||||| Sbjct 54834 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 54775 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| |||| || ||||| || ||||||| || || ||||| || || Sbjct 54774 AGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 54715 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| | | ||| | | || ||| | | |||| || || | | || || Sbjct 54714 ATTCCTTCCTTAT-CTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAAC 54656 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||| || |||||||||||||| Sbjct 54655 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| || || |||| || |||||||||||||| |||||||| | || | | Sbjct 55279 TCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACC 55220 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||| |||||||| || ||||||| || || ||||| || || || || ||||| Sbjct 55219 ATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTT 55160 Query 127018 GTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 || ||| | | ||| || | | |||| || || | | ||| ||||| | || | Sbjct 55159 ATCT-TGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGA 55101 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| || || || ||||||||||| Sbjct 55100 TGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 >seq6 Length=322908 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | || ||| || || || | || ||||| || || ||||||||||| Sbjct 207083 CCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGAT 207024 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | || |||||||| ||||||| ||||| ||||| ||||| Sbjct 207023 AGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 206964 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||| | | || | || |||| | || ||| Sbjct 206963 ATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAACT 206904 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || |||||||| |||||||| ||||| Sbjct 206903 TCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCAT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500461205680