Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq37 86.0 7e-12 >seq37 Length=17717 Score = 86.0 bits (94), Expect = 7e-12 Identities = 281/430 (65%), Gaps = 24/430 (6%) Strand=Plus/Plus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| || || || |||||||||||||| || ||||| || | |||||| ||| ||||| Sbjct 12562 ATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGTCCAT 12621 Query 119267 AAAGTCAAAAGGATTTTTGGAG---TTCCAGATTGGTGGTTGA-CCAACTTGTTTCAGAA 119322 | || |||||||| ||| || ||||| ||| | |||| | || | Sbjct 12622 CCAATCGAAAGGATT---GGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAA-AGTA 12677 Query 119323 GACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGAT 119382 | || | ||| | || ||||||| || ||| | ||| |||||||| || |||| Sbjct 12678 ATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGAT 12737 Query 119383 TACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGG 119442 | || |||| ||| | ||||| | |||| || ||||||||| ||| Sbjct 12738 CAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCT-----GATA- 12791 Query 119443 AGTGAATAGTTTCTGTCGATGGTTTG----TTTC---TCAAGAGTTTAAACAACTCTAC- 119494 ||| | ||| | || | || || ||| | ||| | | | ||| || Sbjct 12792 --TGATTTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACTAAACA 12849 Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||| || |||||||| || || || |||||| || ||||| Sbjct 12850 GGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCC 12909 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||| ||||| | ||| || |||||||| || |||||||| || |||||||| | || Sbjct 12910 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 12969 Query 119615 GCCCTCCACA 119624 ||||| ||| Sbjct 12970 TCCCTCGACA 12979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975580354600