Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq45 167 5e-36 seq6 161 2e-34 >seq45 Length=133594 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | ||| | |||||||||||||||||| |||||||| | ||||| Sbjct 55285 TCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 55226 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | || || ||||| ||||| | |||||||| || || ||||| || Sbjct 55225 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCC 55166 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||| ||| ||| || ||||| || || || ||| || ||||| | Sbjct 55165 TTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAA 55106 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||||||||| || || ||||| | ||||| Sbjct 55105 AGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||||||||| || | || | || |||||||||||||| |||||||| | || ||| Sbjct 54828 CTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTT 54769 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| || | ||||| ||||| ||||| | |||||||| || || ||||| ||| Sbjct 54768 CTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCT 54709 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || |||||||| ||| ||| || ||||| || || || ||| ||| ||||| | Sbjct 54708 TCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAA 54649 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||||||||| || || || | ||||| Sbjct 54648 GTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 156 bits (172), Expect = 9e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||||||||| || | || | || |||||||||||||| |||||||| | |||||| Sbjct 55056 CTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTT 54997 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| || | || || ||||| ||||| | |||||||| || || || || || Sbjct 54996 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCC 54937 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || |||||||| ||| ||| ||||||||||| || || ||| || ||||| | Sbjct 54936 TCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAA 54877 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| |||||||| || ||||| | ||||| Sbjct 54876 GTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | ||| | ||||||||| || || ||||||||||| | ||||| Sbjct 207078 TCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGATAGAGT 207019 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || ||||| | || ||||| || ||||||||||| Sbjct 207018 TCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCC 206959 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || ||| ||| || |||||||| || |||||| ||| ||||| | Sbjct 206958 CTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAACTTCCAA 206899 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| ||||| | |||||| || || | |||||| Sbjct 206898 TGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCAT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480789731719