Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq46 286 4e-72 seq37 190 2e-43 >seq46 Length=385502 Score = 286 bits (316), Expect = 4e-72 Identities = 1184/1863 (64%), Gaps = 46/1863 (2%) Strand=Plus/Minus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 |||||||| || || || ||||||||| |||| ||||| ||||||||| | ||| Sbjct 13941 AAATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAAC 13882 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138 || | | || | | | | ||||| || || | |||||| ||| || | ||| | Sbjct 13881 TTTGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGA 13822 Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCT-TTGTGGT--ATCTCCCATACTGTTTTA 47195 || ||||| || |||||||| ||| || | || || | || ||||| || || ||| Sbjct 13821 CCCCTATCTGCAGCCATATC---AATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTA 13765 Query 47196 TAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttct 47252 |||| | || || || |||| || ||||||||||| || ||| | Sbjct 13764 TAAAGCTCACGTATATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCA 13705 Query 47253 ataattttgttttttaattcatttgaccaaagttttcgttc-agttaatgtttttaaAAG 47311 || || || | || | | || ||| | |||| ||| ||| ||| || Sbjct 13704 ATGATATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAA- 13646 Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| || | || || ||||||||||| |||||| ||| || || || Sbjct 13645 ATGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGGTGATAAATGTTTGAAGT 13586 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 |||| || | | || || || || |||||||| | ||| || ||||| ||||| | Sbjct 13585 GAATGGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGG 13526 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTT-----TTGTATCTNNNNNNNNNNNNGT 47486 | | |||||| ||| | | |||||||| || ||||| Sbjct 13525 AGATATTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAA----- 13471 Query 47487 TTCCAATCCCAAAGATCTGA---TGGAACAACATTCCAAAAATCATATTGAAGAATTCCT 47543 | |||||| ||||| |||| ||| ||| ||| | |||| |||| | ||| ||| Sbjct 13470 TCCCAATCACAAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCT 13411 Query 47544 TTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAA 47603 |||||| |||||||||| |||||||| || || || ||| || || || ||||| Sbjct 13410 TTACTTGCAGGAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAG 13351 Query 47604 CTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCT 47663 || || || | || |||||| || ||||| |||| | | || | ||| | ||| Sbjct 13350 CTAGCGTCAAGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCT 13291 Query 47664 TCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCA 47723 | || || | || | || || || | ||||||| ||| Sbjct 13290 CCCTCCGACTCGTATGGTAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCA 13231 Query 47724 ATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTT 47783 || || | ||| | ||| || ||| || | | |||| | | ||| | Sbjct 13230 ATCCCCAATGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCA 13171 Query 47784 ATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTA 47843 | || || |||||||| | | || |||| |||| |||| | Sbjct 13170 ACGTCAATTATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCA 13111 Query 47844 AAATCAAAC---TTGTTATTTAT---AACAAACCTATTAAGTGCTATAGATGCTAGATTA 47897 ||||||||| ||||||||| | ||||||| | ||| | ||||| || |||||| Sbjct 13110 AAATCAAACGTCTTGTTATTTTTGTCAACAAACTTTGGAAGGCCAATAGACGCCAGATTA 13051 Query 47898 CATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACAT 47957 || || || || || | | | |||| || | || ||||||| |||| |||| | Sbjct 13050 CAAACGGCAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAG 12991 Query 47958 TTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTTACATGCGTCCTTGTAAAGCAT 48016 |||||||||||||||| |||||| || | || || || || || ||| || Sbjct 12990 ACAATAGTACCCAAATTTTTCTGATTACTTTTACTATTTGCA-GCATCTTTATAACAAAT 12932 Query 48017 AAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTT 48076 ||| |||||||| || || || |||| | | ||| | ||||| || || || Sbjct 12931 AAATGGTGTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAAGTTTCTGCGCTTT 12872 Query 48077 TATAACAGCTCTAGCTTTATTATCATGTT---CGTATTTAGTATATAACTTCTCAAATTC 48133 || | | | | | | |||| | || | ||||| ||||| ||| || Sbjct 12871 CATC---GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTC 12815 Query 48134 ATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTC 48193 ||| || | |||| | || || ||||||| || ||||| | | |||||| | Sbjct 12814 ATCACCCCAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCTTG 12755 Query 48194 ATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCT 48253 ||| |||| ||||| ||| || | ||| || | ||| || || ||| | ||| | Sbjct 12754 ATCCTTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCG 12695 Query 48254 AGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGC 48313 | ||| | ||||| || || ||| | ||| ||||| ||| || | | |||| | Sbjct 12694 ACATCTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAAC 12635 Query 48314 ATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTAT 48373 ||||| ||||| ||||| ||||| || ||||| || || || |||||||| || Sbjct 12634 GTGCCACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAAT 12575 Query 48374 ATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATT 48433 ||| || ||||| | |||||||| | ||||| || | | || || || | ||||| Sbjct 12574 ATACCTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATT 12515 Query 48434 GGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACC 48493 || || |||||| ||| | |||| |||||||| | || | || | ||||| Sbjct 12514 TGTCCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACC 12455 Query 48494 TGCCATTTTAG--ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTA 48551 ||| | ||| || || | ||| ||| | | || || |||| || | ||| | Sbjct 12454 TGCAGTCTTACTAATGTTTGCGCATTTAGTTAATGTGT--CAAAAATACCGTTTATTGAA 12397 Query 48552 TCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTA 48611 || ||| || | | || ||||||| |||||||| || | || ||||||||| Sbjct 12396 TCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTA 12337 Query 48612 AATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATA 48671 || | ||| || | ||||||| |||| |||| | |||||||| | ||||| |||| Sbjct 12336 AAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGT 12277 Query 48672 ACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 ||| || ||||| ||| | || || || ||| || ||||| | | || || || Sbjct 12276 GCAGCTTCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGG 12218 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 |||||| |||| |||||| | ||||| | |||||| ||| |||||| ||||| || | Sbjct 12217 TCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCCAGGGTTTTGAAGGC 12158 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTTAT 48849 |||||| | ||| ||| || || | | ||| |||| |||||| ||| |||| |||| Sbjct 12157 AAAATAATCATATTCAAAATC-TTTTGAAAAATCAATTTTTGAATTAATTATTTCTTTAT 12099 Query 48850 GTT 48852 || Sbjct 12098 TTT 12096 >seq37 Length=17717 Score = 190 bits (210), Expect = 2e-43 Identities = 572/858 (67%), Gaps = 49/858 (6%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| | ||||| ||||| ||||| ||||| || |||| | ||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| |||| || ||||| || || || |||||| | |||| || | || ||| Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCC-AAGGCGAAAAGT 12676 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA-TTCATTCCTATTAA 18848 | ||| || || ||||||| ||||||| | ||| | || | | ||||| || || | Sbjct 12677 AATCTGTCAGCAACAAATTCAATATATTGGGCCATAAG-TCTCGAGTTCATACCAATAAG 12735 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | |||||| || | ||| |||||| | | ||| | | || || |||||||| || Sbjct 12736 ATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGAT 12795 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCA 18966 | |||||| | | | | || | ||| ||| | | ||||| ||| Sbjct 12796 TTGTTGCACTCTAGGGAC--TGGTAATTTAAATTTAAGGGCCTTATATACTAAACAGGCA 12853 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||| |||||| || || || | || || | ||||||||||||||| | |||||| Sbjct 12854 AAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTCCAGGC 12913 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACC 19085 || ||||| | |||||| | ||| || || | | |||| | | |||||||| | || || Sbjct 12914 ATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCC 12972 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAAC-TAGCATCATTATTATGAATCC 19144 || || || || ||| | |||||| | || | || ||| ||| |||| Sbjct 12973 CTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGATCGC-TCAGAATTC---ATCC 13028 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| |||||| || |||||||| || || || || ||| | |||| Sbjct 13029 ATTTAGTTGCCCATTCTGCCTTCTTCTTAAC---------TGCTTCAATATGAG-AAATT 13078 Query 19205 GATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGT 19255 | | || | ||| || ||||||| | || |||||||||||| | || Sbjct 13079 GCTTCAAAAAG-CATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGA 13137 Query 19256 ACA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTG-CTT 19312 | | |||| ||| || | || |||| ||| ||||| | ||| | |||| || ||| Sbjct 13138 ATAAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATA-CATCCTGGCTT 13196 Query 19313 CTGTTATCTGTACTTCACT-ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 | | ||| |||| ||| || | ||||| || | |||| ||||| |||| || |||||| Sbjct 13197 CCGGTATTTGTATTTCTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCA 13255 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAA- 19427 || || ||||| |||||||| |||| ||| ||||||||||||||| ||| |||| Sbjct 13256 CTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTCT----TTAAG 13311 Query 19428 TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGC 19487 | | ||| || ||||||| | | | ||| | ||||||| |||||| || || Sbjct 13312 ACTTTCCCAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGC 13371 Query 19488 CTCTGCTTTTTTATACAT 19505 || || ||||||||||| Sbjct 13372 TTCGGCCTTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108399497480