Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq23 242 3e-58 seq39 221 1e-51 seq12 203 3e-46 seq11 174 1e-37 seq41 141 7e-28 seq14 136 3e-26 seq49 113 4e-19 seq45 113 4e-19 seq6 113 4e-19 >seq23 Length=109376 Score = 242 bits (268), Expect = 3e-58 Identities = 576/863 (67%), Gaps = 23/863 (3%) Strand=Plus/Minus Query 551749 TATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTG 551808 || || | ||||||||| | ||| || ||||| ||| ||| |||| | |||| Sbjct 99884 TAACTATTGAAGATGGTATTTTTGAAGTCAAGGCTACCGCTGGTGATACTCACTTGGGTG 99825 Query 551809 GCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACA 551868 | |||||||||||||| ||||| || || ||||| ||||||| || |||| || | Sbjct 99824 GTGAAGATTTTGATAACAGACTTGTTGAATTCTGTGTGCAAGATTTCAAGAGAAAGAATA 99765 Query 551869 AAGTT---GATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAA 551925 || | ||| || ||||| ||| | ||| | | | || |||||| || || Sbjct 99764 GAGGTATGGATTTAACTACAAATGCTAGAGCCTTAAGAAGACTCAGAACTCAATGTGAGC 99705 Query 551926 GAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTG 551985 | || || || || | |||||| ||||||| | || ||||| |||||||| | | || Sbjct 99704 GTGCAAAGAGAACTTTGTCATCTTCTACTCAAGCTACAATTGAGTTAGATTCACTCTATG 99645 Query 551986 AGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATC 552045 | || |||||||| | | | || || | ||| ||||| | || ||||| Sbjct 99644 AAGGTATTGATTACTCTGTTGCCGTCAGTAGAGCTAGATTCGAAGAACTCTGCGCTGATT 99585 Query 552046 TCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAA-- 552103 ||| | ||| | | ||||| || |||| | | ||| | || ||||| Sbjct 99584 ACTTCCGTGCAACTTTAGCTCCAGTTGAGAAAGTACTCAAGGATGCCGGTATGGATAAGA 99525 Query 552104 -ATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCG 552162 ||| |||||||| |||| | |||||||| |||||| | ||||| || ||| | Sbjct 99524 GATCT---GTACATGATGTTGTATTGGTTGGTGGTTCTACACGTATTCCAAAGGTTCAGG 99468 Query 552163 AAATG-TTAAGTTCTTATTTCAATGGTAAAAA---ATTAAATGAAAGTGTTAATCCAGAT 552218 || || || || ||| || |||||| | || || | || | ||||||||| Sbjct 99467 CTTTGATTCAGGAATTCTTT-AACGGTAAAGAGCCATGCAAAGCAA---TCAATCCAGAT 99412 Query 552219 GAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA---CAAACTGAT 552275 || || |||||||||||||| || | ||||| ||||| | ||| ||| | | Sbjct 99411 GAAGCCGTTGCCTATGGTGCTGCTGTACAAGCTGCTATCTTAAATGGTGAGCAATCCTCT 99352 Query 552276 GAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACA 552335 | | || || | || | | |||||| |||| |||| |||||||||||||| Sbjct 99351 GCCG---TTCAGGATCTCTTATTGTTGGATGTTGCTCCATTATCACTTGGTTTAGAAACT 99295 Query 552336 GTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCT 552395 | ||| ||| ||||||| || ||||| || | ||||| ||||| || || || || Sbjct 99294 GCTGGTGGTGTTATGACCAAGCTTATTGAGCGTAATACAACTATCCCAGCAAAGAAGACT 99235 Query 552396 CGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGA 552455 | || || |||| ||| | ||||| || | | ||| || || ||| |||||| Sbjct 99234 CAAGTCTTCACTACCTATGCTGATAACCAGAGCGGTGTCTTGATCCAGGTTTATGAAGGT 99175 Query 552456 GAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCT 552515 || ||| | | ||||| ||||| ||| || || | || || | || |||||||| Sbjct 99174 GAGAGAGCAATGACTAAGGATAACCATCTTCTCGGAAAGTTCCATCTTGATGGTATTCCA 99115 Query 552516 CCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATT 552575 || || || | || ||||| ||||||||||| ||||| ||||||||||| ||||| || Sbjct 99114 CCAGCACCAAGAGGCGTACCACAAATTGAAGTCACTTTTGATATCGATGCTAATGGTATC 99055 Query 552576 TTGAATGTGACTGCTTGTGATAA 552598 |||||||| ||||| |||||| Sbjct 99054 TTGAATGTATCTGCTGTTGATAA 99032 Score = 217 bits (240), Expect = 1e-50 Identities = 386/554 (70%), Gaps = 13/554 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| |||||||| || ||||| ||||||||||| ||| ||| | || Sbjct 100501 AGCTATTGGTATTGATTTAGGTACAACATACTCATGTGTTGGTGTATGGAGAAACGATAC 100442 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || ||| || | ||||||||||||||| | || || ||||||||||| | || || Sbjct 100441 TGTAGATATTGTTCCAAATGATCAAGGTAACCGTACAACACCATCTTATGTAGCATTTAC 100382 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 |||||||| | | | ||||||||||||| || |||||| || | || || || Sbjct 100381 AGAAACTGAGCGTCTTATTGGTGATGCAGCGAAGAATCAAGTTGCTAGAAACCCAGAAAA 100322 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| ||||||||||||| ||| | ||||| |||| ||| ||||| | || || Sbjct 100321 TACAGTTTTTGATGCTAAGCGTCTTATTGGTAGAAAGTTTGATGATCAAGCAGTACAAAG 100262 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC--TGGA-AAACC--TTAT-AT 550284 ||||||| || ||||| || || | |||| | | | ||| ||||| | || | Sbjct 100261 TGATATGACTCACTGGCCATTTAAAGTAGTTAGGGGTCCAAAGGACAAACCAATCATCAG 100202 Query 550285 TG-AAGCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATG 550342 || ||||||| || || | || | || || | ||| ||||||| ||||| Sbjct 100201 TGTGAGCTACT--TGGGTGAAAAG---AAGGAGTTCCATGCTGAAGAAATTTCTGCTATG 100147 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 || ||| ||| ||||| ||| | || | | || | | ||| | |||| Sbjct 100146 GTCTTACAGAAGATGAAGGAAATCTCTGAAGCATACTTGGGCCGCCCAATTAAGAATGCT 100087 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 ||| | ||||| ||||| || || |||||||||||||||||||| || || |||||||| Sbjct 100086 GTAGTTACTGTTCCAGCTTACTTCAATGACTCACAACGTCAAGCAACAAAGGATGCTGGT 100027 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 |||||||| | ||||| | | || || || || || ||||| ||||| |||| Sbjct 100026 GCAATTGCTGGTTTGAATGTAATGAGAATCATTAACGAGCCAACTGCAGCTGCTATTGCC 99967 Query 550523 TATGGACTTGATAA 550536 ||||| |||||||| Sbjct 99966 TATGGTCTTGATAA 99953 >seq39 Length=423162 Score = 221 bits (244), Expect = 1e-51 Identities = 372/534 (70%), Gaps = 6/534 (1%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || ||| ||||| |||||||| || || ||| ||||||||| | | | ||||||| Sbjct 342611 AGTTATTGGTATCGATTTAGGTACTACTTATTCATGTGTTGGTATCTACAAGAATGGTAG 342552 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || |||||| | ||||| |||||||| | | ||| ||||| ||||| || ||||| Sbjct 342551 AGTAGAGATTATTCCAAATGAACAAGGTAATCGTATTACACCATCATATGTATCATTCAC 342492 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||| ||| ||||||| |||| || ||||||||||| ||||| | Sbjct 342491 TGATGATGAGAGATTAATTGGTGAGTCAGCCAAGAATCAAGCCACTATCAATCCAGTTCA 342432 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | || |||| || | | ||||| | ||||||| ||| | ||||| Sbjct 342431 GACTTTGTTCGATGTAAAGAGACTTATTGGCCGTCGTTTTAAGGATGATTCCGTTCAAAA 342372 Query 550231 AGATATGAAGCATTG--GCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 |||| || | ||| ||| | ||||| |||| ||| |||||||| || || Sbjct 342371 GGATAAGA--CTTTGTTGCCATATGAAATTATTAACAGGGATGGGAAACCTTACATACAA 342314 Query 550289 GCTACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | || | |||| | | || ||||| | |||||| | |||| ||||||| || Sbjct 342313 GTTTCTGTT-AAGGGTGAGAAGAAGCAATTAGCTCCAGAAGAGGTTTCTGCTATGGTCTT 342255 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | | || ||||| ||| || |||| | ||||| | ||||| | | |||||||||| Sbjct 342254 AGTCAAGATGAAGGAAATCGCTGAGGCTTATCTTGGTAAGGAAGTAAAGCATGCAGTAAT 342195 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| ||||| || ||||||||| | || ||||||||||| || |||||||| ||| Sbjct 342194 TACTGTCCCAGCTTACTTTAATGACGCTCAGCGTCAAGCTACCAAGGATGCTGGTGCTAT 342135 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 |||||| | ||||| | |||||||| || || || || || || ||| |||| Sbjct 342134 TGCTGGCTTGAATGTAATCCGTATTATTAACGAGCCAACAGCAGCAGCAATTGC 342081 >seq12 Length=160301 Score = 203 bits (224), Expect = 3e-46 Identities = 464/688 (67%), Gaps = 33/688 (5%) Strand=Plus/Plus Query 368493 AGAAAAAATGTTAAATAATAATTCTAAAATAAATTGGATGCCATCTAATATTGGAACAAA 368552 ||||||| | ||| ||||||| |||| |||||||| ||| | || || | ||| Sbjct 19847 AGAAAAATTACTAATTAATAATGAAAAAACTAATTGGATTCCAAGTTATGTTAAAGAAAA 19906 Query 368553 ACATTTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTG 368612 | ||| |||||||||| ||| || | ||||||||| || | | | | || || Sbjct 19907 AAGATTTCATAATTGGCTGCAAGATGCTAGAGATTGGTGTGTTAGTCGTAATCGTTTCTG 19966 Query 368613 GGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTC 368672 |||||| || || || ||||| ||| || ||| | | ||| ||||| ||| Sbjct 19967 GGGAACACCTATACCTATATGGGTATCAGAAGATTATACAATTATTAAATGTATTGGTAG 20026 Query 368673 AATTAAAGAATTGCAAGAATTA---TCTGGTGTGCAAAAT------ATTAGTGATTTACA 368723 ||| ||||||| || ||| || | | || || |||| ||| |||| Sbjct 20027 TATTGAAGAATTAAAATCTTTAGCATCCAATTTAAAAGATGGGGAAATTAAAGATATACA 20086 Query 368724 TATTGATAAAATTGATCACATTAAAATTCC--ATCAAAGAAAGGAAAAGGTTTATTGTCT 368781 | || ||||| | ||| ||||||| ||| |||| || || | || || Sbjct 20087 TCGCCATTTTATTGACTATATTGAAATTCCTGATCCAAGA--GGGAATGATTATCCACCT 20144 Query 368782 C------GAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGG- 368834 || |||||| |||||| ||||| |||||||||||||||||||||||||| | Sbjct 20145 TTAAAAAGAATTGAAGAAGTTTTTGATTGTTGGTTTGAATCAGGTTCTATGCCTTACGCA 20204 Query 368835 TCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGC 368894 || | || ||||||||||||| || ||| ||| ||||| | ||| || | Sbjct 20205 TCTATTA-ATTATCCATTTGAAAATCAGGAATTGTTTAATAAT-----ATATTCCCTG-C 20257 Query 368895 TGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATT 368954 |||||||| |||| | ||||||||| | || |||||||| || || | ||||| Sbjct 20258 AGATTTTGTTGGAGAAGGTTTAGATCAAACAAGAGGATGGTTTTACACATTAATGGTATT 20317 Query 368955 ATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAA 369014 ||| ||||| | || ||| |||| |||||||||||| | || || | ||| | ||| Sbjct 20318 ATCAACAGCACTATTTGATCAACCAGCTTTTAAAAATATTATTGTGAATGGCTTGGTTTT 20377 Query 369015 TGCATCTGATGGTCAAAAGATGTCAAAAAG--TAAGGGTAATTATTCCGATCC-TAATAT 369071 || ||||||||| |||| ||||||||||| ||| || ||| ||||||| | || Sbjct 20378 GGCTTCTGATGGTAAAAAAATGTCAAAAAGATTAA--AAAACTATCCCGATCCATTGGAT 20435 Query 369072 TTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTCATCACCTGTAGT 369131 || || |||| | |||||| ||| |||||||||||| || | ||||| || || Sbjct 20436 ATT-GTTAATAAGTATGGTGCAGATTCTTTGAGATTATTTTTAATCAACTCACCAGTTGT 20494 Query 369132 AAAAGCAGAATCTATTAAATTTGATGAA 369159 | ||||||| || | | |||| | ||| Sbjct 20495 TAGAGCAGAAACTTTAAGATTTAAAGAA 20522 >seq11 Length=225008 Score = 174 bits (192), Expect = 1e-37 Identities = 345/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 428100 AACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGCATAAT 428159 |||| || |||||||| || ||||||||||| | |||||||||||| | |||| | |||| Sbjct 75579 AACCTGTACCAATTCCATCAGTACCATTTACCAAAATCATTGGAATTATTGGTACGTAAT 75520 Query 428160 ATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAAAATATCAAAATCATGCT 428219 || |||||||| || ||| ||||| || ||| | | | |||| || Sbjct 75519 ATAAAGGTTCAATTTGTTGTCCATCATCATACAAATAAGTTAATAAAGGATCATCAGCCT 75460 Query 428220 CGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCG---CTTG 428276 | || || | | ||| | ||| | |||| ||||| ||||| | || |||| Sbjct 75459 CTGGGAAAATATATCTAGTCCATTTAGATAGTTTAGTAAATATATAACGAGCAGCACTTG 75400 Query 428277 CGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATCAATAAATTAA 428336 | |||||| || ||| | ||||| | |||||||| ||| ||| | || ||| | Sbjct 75399 C---ATCTTTTCCACCTTCCTTTCTACTACCAAATTGACCACATGGCTCTAGTAGATTTA 75343 Query 428337 TATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACTAGTTAAGGATTGTT 428396 |||||||||||| ||| ||||||| |||||||||||||| ||||| ||| ||| || Sbjct 75342 GATTATTACTTCCAACAAAATTTTGTGCCATATTAACAATTGTACTTTGTAATGATGATT 75283 Query 428397 CACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAATTCTGATACCTTTATTT 428456 | ||||||||||| | | || | ||| ||| ||||| || | ||||| Sbjct 75282 CTCCATGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTG-CAACTTTA--A 75226 Query 428457 CTTCTTTATAAATACCTTCTTCTACTGATCCATAAAATACTTTGCGTTGTGATGGTTTGA 428516 ||| |||| || || || | | | || ||| |||||| | |||| ||||| | Sbjct 75225 GTTCATTATTAAGCTTTTTTTTAAAGGTTGCAAAAAGTACTTTTCTTTGTCCAGGTTTTA 75166 Query 428517 ATCCATCCATAATATTAGGTATAGATCTTAAATTATC--ATCCACTGAGAATGATATTAG 428574 | ||||| | | ||| || |||||||| | |||| ||| ||| ||| ||| || Sbjct 75165 AACCATCTAATAAATTTGGAATAGATCTAGTAGTATCATATCTACT--AAATAATACAAG 75108 Query 428575 TTCTTGATGAATGAAATCATAATAT 428599 ||||| |||||| |||||| ||||| Sbjct 75107 TTCTTTATGAATAAAATCAAAATAT 75083 >seq41 Length=345200 Score = 141 bits (156), Expect = 7e-28 Identities = 202/282 (72%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 || ||||| || ||||| | ||| ||||||| | ||||| || | ||| | || Sbjct 73223 GACGTTACACCCTTATCTTTAGGTATAGAAACTTTGGGAGGAGTTTTTACTCGATTAATT 73282 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 ||||||||||||| || || |||||| | ||||| || || | ||||||| Sbjct 73283 AATAGAAATACTACAATCCCCACTAAAAAGAGCCAAGTATTCTCCACTGCTGCAGATAAC 73342 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 |||||| ||| |||| || |||| ||||||||||| |||| || ||||||||| Sbjct 73343 CAAACTCAAGTTGGAATTAAAGTTTTCCAAGGAGAAAGAGAATTTGCTGCAGATAATAAG 73402 Query 552483 CAACTTGG-TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||||| | ||| || | | || |||||||| || ||| | || || || ||||| Sbjct 73403 TTGCTTGGACAATTTGAAATGA-TTGGAATTCCTCCAGCGCCTAGAGGGGTTCCTCAAAT 73461 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 |||||| || || ||||| ||||| ||||||||| ||||||| Sbjct 73462 TGAAGTCACCTTTGATATTGATGCAAATGGAATTATGAATGT 73503 Score = 95.1 bits (104), Expect = 1e-13 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT--ACGGATGCAGTAATAA 550409 ||||||||| |||| || ||| | ||||| |||||| | | |||| || || | Sbjct 72425 AAAATGAAAGAAACTGCTGAAACTTATCTTGGT--AGAAGTGTAAAGCATGCTGTTATTA 72482 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||||||||| || |||||||| || || |||||||| ||||| |||||||| ||| | Sbjct 72483 CTGTACCAGCCTACTTTAATGATTCTCAGCGTCAAGCAACTAAGGATGCTGGCTCTATAG 72542 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || | ||||| | || || ||||| || || || || || || ||||| ||| Sbjct 72543 CAGGCTTAAATGTGACAAGAATCATTAATGAGCCAACAGCAGCAGCCCTGGCATACGGAA 72602 Query 550530 TTGATAAA 550537 | || ||| Sbjct 72603 TGGAAAAA 72610 >seq14 Length=135702 Score = 136 bits (150), Expect = 3e-26 Identities = 276/400 (69%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 344255 TTTTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATT-TTA 344313 ||||||| | ||||| ||||| || | |||||| || ||||| |||||||| ||| || Sbjct 76356 TTTTATCGTCAACCATATGTTTTAGTCTTTGATAGTAAGTTGGTCCAATGAAGATTCTTG 76415 Query 344314 ACTTCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCATGCTTC--AT 344371 ||| ||| ||| | ||| || ||||| |||||| ||||||||| || ||| | Sbjct 76416 ACT-CCAATCTCTTTCCTGTATGGCCATTGTACATTACTTCATTTCC--ATTTTTCTGAA 76472 Query 344372 GTCCTAAAGCTACTAAATCATCATTAATTTTATTAATAT-TAACTCCTGTAAATGGAGTT 344430 ||| || ||| || | | | | | || | | | | | ||||| |||||| Sbjct 76473 ATCCAGAA-CTATGTAAACGGCTAGATATCTCTTCAACTGTGATTTTCGTAAAAGGAGTT 76531 Query 344431 GCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGA 344490 ||||| || | | |||| ||||||||| |||| || |||| |||||||||||| ||| Sbjct 76532 GCATCGCCCTCCAATCCTTGAATTGCACACGCTTTTCCAAGTAGACATTCAATTAAATGA 76591 Query 344491 CCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCT 344550 || || |||||||| || ||| || |||||| || ||||| || ||||| | ||| Sbjct 76592 CCAATTGTCATACGCGAAGGAATAGCATGAGGATTCATGATAATGTCTGGAATAATTCCA 76651 Query 344551 GATTTTGTGAATGGAAGATCTGCA-CGATGAATTTTAAATCCAACTGTTCCTTTTTGTCC 344609 || ||| ||||| | ||| || || || || | || | ||| || ||||| || Sbjct 76652 TCTTGTGTAAATGGCATATCCTCAGTTCTGTATGTT-ATGCCGATTGTACCCTTTTGGCC 76710 Query 344610 AGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTT 344649 | ||| |||| || ||||| || || || |||||| Sbjct 76711 ATGTCTGGATGCAAACTTATCTCCAACATGAGGTATTCTT 76750 >seq49 Length=416705 Score = 113 bits (124), Expect = 4e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 |||||| | | ||||| || |||||||| ||||| |||||||||||| | ||||| || Sbjct 93593 AAAGTAATTGTGGATTTCTCATCACCAAACATTGCAAAAGAAATGCATGTGGGACACTTA 93534 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTT 930773 | ||||| || ||||| || | |||||||| | |||||||| ||| | |||| Sbjct 93533 AGATCTACAATCATTGGCGACACAATATGTAGAGTTCTTGAATATTTAGGATTTGAAGTA 93474 Query 930774 CATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATATA 930833 || | ||||| |||| |||||||| || |||||||||||| | |||| ||| || Sbjct 93473 TTAAGAATTAATCACGTTGGAGATTGGGGTACTCAATTTGGTATGCTTATTGAATATTTA 93414 >seq45 Length=133594 Score = 113 bits (124), Expect = 4e-19 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||| | | ||| | ||| | |||| ||||| ||| |||||||||| || || Sbjct 54829 CCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGT 54770 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 ||| ||| || | ||| ||||| ||||| || | | ||| |||||||| |||||||| Sbjct 54769 TCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCC 54710 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCG 563430 ||| ||||||||||| ||| || || ||| || ||||| || || || ||| Sbjct 54709 TTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATC--TGAAGGTTCAACTTCC 54652 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| | ||| || || || | ||| ||||| ||||| |||||| Sbjct 54651 AAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATA 54607 Score = 109 bits (120), Expect = 4e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||| | | ||| | ||| | |||| ||||| ||| |||||||||| ||||| Sbjct 55057 CCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 54998 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 ||| ||| || | ||||||||| ||||| || | | ||| |||||||| || || || Sbjct 54997 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCC 54938 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 || ||||||||||| ||| || || |||||||||||| | | | ||| | Sbjct 54937 CTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAA 54878 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| | || || || || | ||| || |||||||| |||||| Sbjct 54877 AGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATA 54835 Score = 109 bits (120), Expect = 4e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 55262 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 55205 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| ||||||||||| ||||||||||| ||| Sbjct 55204 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTTGC 55145 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || ||||| | | | ||| | ||| | || || || || | Sbjct 55144 CTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGATGGTCTTTCCTGTCAA 55085 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 || ||||||||||| |||||| Sbjct 55084 GGTCTTAACGAAAATCTGCATA 55063 >seq6 Length=322908 Score = 113 bits (124), Expect = 4e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||||| ||||||||| |||||| | ||| ||||| ||||| || | | Sbjct 207038 ATATTGTAATCAGATAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGC 206979 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || |||||||||||||| || || ||||| || || ||| ||||| |||||| ||| Sbjct 206978 TGTTGATCAGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTA 206919 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | ||| | || | || || || || ||||||||||| ||||||||| Sbjct 206918 TCCGAAGGTTCAACTTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGC 206859 Query 563473 AT 563474 || Sbjct 206858 AT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029292985582930