Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq37 194 2e-44 >seq37 Length=17717 Score = 194 bits (214), Expect = 2e-44 Identities = 571/871 (66%), Gaps = 43/871 (5%) Strand=Plus/Plus Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 ||||||||||||| |||| ||||||| || || ||||| || | ||||| || | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 36946 CCATAAAATCAAATGGATTAGATGTATTATATATAGTACTA-CATGATAATTCCTTCAGA 37004 |||| |||| || ||||| || || || || | | ||| || | || Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGTAGATTTTTGGAACATCC-AAGGCGAAAAGT 12676 Query 37005 AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGT 37064 | || || ||||||||||| || |||| ||| ||| |||| |||||||| || Sbjct 12677 AATCTGTCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAGTTCATACCAATAAGA 12736 Query 37065 TTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATA 37124 | || |||| | ||| |||||| | |||| | | ||||| ||| | Sbjct 12737 TCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTG-------A 12789 Query 37125 TTAACAATAACTTCTT-CAGTTGGGGGA----TATTTTAAATAT-------TTAAACAAT 37172 | || | || || || | |||| || ||||||| | ||| | | | Sbjct 12790 T-----ATGATTTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTTATATACT 12844 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||| ||||| |||||||| | || || | |||||||||||| || Sbjct 12845 AAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTG 12904 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 | ||| ||||| | || | |||||||| |||||| ||||| |||||| | |||||||| Sbjct 12905 AGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC-ACAAAAGCTACCAGAAAA 12963 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 | ||| || || || || ||| | | || | | | |||||| | || Sbjct 12964 TAGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCAGCGAAAGAT------CGCTC 13017 Query 37352 AGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 |||| |||||||| ||| ||| |||||||| ||||| |||||| ||| Sbjct 13018 AGAATTCATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAAT 13077 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||||| || || | | ||||| | | || || ||||| ||||||| |||| Sbjct 13078 TGCTTCAAAAAGCATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGA 13137 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||| ||||| || || | ||||||| || |||||| ||||| | ||| ||||| Sbjct 13138 ATAAGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATACATCCTGGCTTC 13197 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | || ||| | || | | ||| | || |||||||| |||| || |||||||| Sbjct 13198 CGGTATTTGTATTTCTCTGAGAAAATTTACTGCCAAGTTTTCCATAACAATACCATCACT 13257 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATTTGATAATTT 37645 || |||||||| || | ||||||||| ||||||||| ||||| || ||| | | | Sbjct 13258 TGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTC-TTTAAGA--CT 13314 Query 37646 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAA 37705 || ||| || ||||||| | | ||||| ||| ||| |||||| ||| Sbjct 13315 TTCCCAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTC 13374 Query 37706 TGCACGTTTATACATCGTCCAAATATCATTA 37736 || ||||||||||| |||||| || ||| Sbjct 13375 GGCCTTTTTATACATCGACCAAATGTCCTTA 13405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316377974280