Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq45 176 4e-39 seq6 158 1e-33 >seq45 Length=133594 Score = 176 bits (194), Expect = 4e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| | |||||| |||||||| || |||||||| | || ||||| |||| Sbjct 54819 AATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCATCC 54760 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || |||||||| |||||||| |||||||| |||||||| || ||||| ||||| |||||| Sbjct 54759 TCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCT 54700 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| || ||| | || | ||| || || | ||| ||||| | ||||| || Sbjct 54699 TGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATAGTC 54640 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || ||||| |||||||| Sbjct 54639 TTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | || ||||| || | || || |||||||| || |||||||| | Sbjct 55292 TTCCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAG 55233 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||||| |||| || ||||| || |||||||| |||||||| |||||||| || | Sbjct 55232 AGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTG 55173 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| ||||||||||| ||| || ||| | || | ||| || || | || | Sbjct 55172 GAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAA 55113 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| || || || || || || || || || |||||||| Sbjct 55112 CTTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| | |||||| |||||||| || |||||||| | || |||||| |||| Sbjct 55047 AATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCC 54988 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||||| || |||||||| |||||||| |||||||| || || || || || |||||| Sbjct 54987 TCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTATCT 54928 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| || || | || | || || || | || ||||| | ||||| || Sbjct 54927 TGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATGGTC 54868 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || |||||||| Sbjct 54867 TTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 158 bits (174), Expect = 1e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || ||||| || | || || || || || ||||||||||| | | ||||||| |||| Sbjct 207068 AATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGATAGAGTTCTGCCATCT 207009 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| ||||||||||||||||| || |||||||| || ||||| Sbjct 207008 TCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTATCC 206949 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || ||| |||||| | || | ||| || || | ||| ||||| | |||| || Sbjct 206948 TGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAACTTCCAATGTGATGGTC 206889 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| |||||| ||||| || ||||| Sbjct 206888 TTCCCTGTTAGAGTTTTAACAAAAATTTGCAT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278124710349