Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq45 131 1e-25 seq6 118 8e-22 >seq45 Length=133594 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || | ||| || ||||||| || |||||||||||| ||||||||||| Sbjct 54834 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 54775 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | | || || || ||||| || ||||| |||| || |||||||| | ||| Sbjct 54774 AGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 54715 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | || ||||| | || || Sbjct 54714 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACT 54655 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || |||||||||||||| Sbjct 54654 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || | ||| || ||||||| || |||||||||||| ||||||||||| Sbjct 55062 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 55003 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | || Sbjct 55002 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGT 54943 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||||| || || | | | ||||| | ||| || Sbjct 54942 ATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACT 54883 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || |||||||||||||| || || ||||||||||| Sbjct 54882 TCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || | ||| || || |||| ||| |||||||||||| ||||||||||| Sbjct 55290 CCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 55231 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | ||| Sbjct 55230 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 55171 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | || ||||| | ||| || Sbjct 55170 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACT 55111 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| || || || ||||||||||| Sbjct 55110 TCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 >seq6 Length=322908 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| || || || | ||| ||| || || ||||||||||||||| Sbjct 207083 CCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGAT 207024 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || ||||| ||||| || ||||| |||| ||||||||||| | ||| Sbjct 207023 AGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 206964 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || |||||| |||||| | | || || || | || || Sbjct 206963 ATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAACT 206904 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || || | |||||| |||||||| |||||| Sbjct 206903 TCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATC 206856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937335367411