Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq45 86.0 5e-12 >seq6 Length=322908 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| |||||||| ||||| ||||| |||| || || ||||| || ||| ||||| Sbjct 206853 AAAGATGCAAATTTTTGTTAAAACTCTAACAGGGAAGACCATCACATTGGAAGTTGAACC 206912 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || || | | || | ||| ||| ||| || || ||||| | || || Sbjct 206913 TTCGGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGA 206972 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||||| | | |||||||| || || |||||||||||| | |||| | | ||||| Sbjct 206973 TCAACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTCTATCTGATTA 207032 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 || || || || || || ||| ||||| | ||||| ||| | |||| || |||| Sbjct 207033 CAATATCCAGAAGGAGTCCACTTTGCACTTAGTATTGAGACTTAGAGGTGGTGTAAT 207089 >seq45 Length=133594 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || || ||||| || ||| || |||||| Sbjct 55064 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCA 55123 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| || || || || ||| | || |||||| Sbjct 55124 GATACTATCGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 55183 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || |||||||| || ||| || |||| | | ||||| ||| Sbjct 55184 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 55243 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || ||| | ||| | ||||| ||| | |||| || || Sbjct 55244 ATTCAAAAAGAGTCCACTTTACACTTAGTATTGAGACTTAGAGGCGGAAT 55293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404504476603