Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq46 140 2e-28 >seq46 Length=385502 Score = 140 bits (154), Expect = 2e-28 Identities = 299/443 (67%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| ||||||| || | ||| |||| ||| | ||| ||| | ||| | |||| Sbjct 12747 TCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCTC 12688 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 || ||||| || |||||||| || | | || | || || | || ||| |||||| Sbjct 12687 ATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAC 12628 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||| ||||| || |||| |||||| | || |||||||||||||| | || || Sbjct 12627 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 12568 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 ||||| ||||| |||| |||||| |||| |||||| | || ||| ||||| | Sbjct 12567 GCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCCCT 12508 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA-TG-AATACCGATTCCACCAGCCC 26219 |||| | || || || |||||||| | || || | || | ||||| || Sbjct 12507 CGAATATATGAACCAGTTCCTCTAATAT--TACTCACTGCCACTCCAAGGCCACCTGCAG 12450 Query 26220 ATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 || ||| ||| || | | | ||| || ||||| || ||||| ||| || Sbjct 12449 TCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTTTATTGAATCTTCTG 12390 Query 26280 TCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATG 26339 || | | |||||||||||| || | ||| | | | || ||||||||||| | || Sbjct 12389 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAGTG 12330 Query 26340 TCGGTGTAGCATGAGTATAATAT 26362 | ||||| ||||||||| ||||| Sbjct 12329 TGGGTGTTGCATGAGTAAAATAT 12307 Score = 102 bits (112), Expect = 4e-17 Identities = 328/500 (66%), Gaps = 22/500 (4%) Strand=Plus/Minus Query 24691 TTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCAT 24750 || ||| || | |||||| || || ||||| || || |||||||| ||||||||||| Sbjct 13951 TTGAGTCCTCAAATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCAT 13892 Query 24751 TGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCA 24810 |||| || ||||||| || || ||| | | | ||||| ||||| | ||| || Sbjct 13891 AGATGATAACTTTGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACA 13832 Query 24811 AACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGC 24870 |||| | | ||||||||||| | ||||| | || || | || || || | Sbjct 13831 AACATATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAAC 13772 Query 24871 TGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA--CTGATCCA 24928 || || || ||| ||| || || || | |||||||||| ||| ||| Sbjct 13771 AGTCTTATAAAGCTCACGTATATCCTCCGGGATTGTAAGTATATTTTGAATACTG--CCA 13714 Query 24929 TTTTCTCTCAAT-AGATTC-----AATCTCATATTCGGTGTCCAAAGATTAATTTTTTCA 24982 || | | |||| | |||| || || || || ||| | || || | Sbjct 13713 TTATTTG-CAATGATATTCTGCTTAAGCTTATCATC-----CCATAACCCAAGTTCTAGT 13660 Query 24983 AGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATT 25042 | ||| | | || || ||||| | || || || ||||| | || || | | Sbjct 13659 AAATCATTTAGTAAATGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGG--T 13602 Query 25043 GATAA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 ||||| ||||||||||||||| ||||||| || || || ||||| ||||| ||||| | Sbjct 13601 GATAAATGTTTGAAGTGAATGGCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGG 13542 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCT- 25159 | |||||||||||| | |||||||| ||||| | | ||||||||| ||| ||| Sbjct 13541 AGGCTGTTGGCATTGGAGATATTAATAAAGAATTACGAATACCATATTTGGAAAT-TCTA 13483 Query 25160 TGTTTTAATTTATCCCAATC 25179 | ||| | | ||||||||| Sbjct 13482 TCTTTAAGTGAATCCCAATC 13463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039824216275