Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq37 183 4e-41 >seq37 Length=17717 Score = 183 bits (202), Expect = 4e-41 Identities = 564/851 (66%), Gaps = 33/851 (4%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| |||||||||||| | || |||||||| || ||||| || | | ||| || | | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT-TAATTCGTATAAT 17983 ||| |||| || ||||| | ||| | | |||||| || || || | | | Sbjct 12618 CCATCCAATCGAAAGGATTGGAAACTTTGT-AGATTTTTGGAACATCCAAGGCGAAAAGT 12676 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTAG 18042 ||||| || || |||||||| | |||||| | ||| || || | | |||||||| | || Sbjct 12677 AATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACCAATAAG 12735 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| |||| || ||| | | | || | ||||||| ||| ||| || Sbjct 12736 ATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATGAT 12795 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | || |||| ||| |||||| |||| | | | ||||| |||||| || Sbjct 12796 TTGTTGCACTCTAGGGACTGGTAATTTA--AATT-TAAGGGCCTTATATACTAAACAGGC 12852 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 |||||||| |||| |||||||| | || || ||| ||| ||| ||| || | || | Sbjct 12853 AAAATCAGCATGTAGGCCTTCATCAC-GGCTAATAAGTTCATTAGAAAATGTGAGTCCAG 12911 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | |||||| |||||||| || | || |||| |||||| | || | Sbjct 12912 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 12971 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG---- 18336 |||| || |||| ||| | || | ||||||||| ||| || |||||| Sbjct 12972 CCTCGACAGCAC-AGAATCCAATAATTCTTTCAGCGAAA-------GATCGCTCAGAATT 13023 Query 18337 TATCCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||||| |||||||||| |||| | | ||| || || | Sbjct 13024 CATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGC-TTCAATATGAGAAATTGCTT 13082 Query 18396 TAAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 || ||| ||| | |||||| || | ||||| | || || | | ||||| Sbjct 13083 CAA--AAAGCATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATA 13140 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 ||||| |||||| || |||| || |||||| |||| || || || || || Sbjct 13141 AGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATACATCCTGGCTTCCGG 13200 Query 18514 ATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 ||| || || || | ||||| || || |||| || || |||| ||||| ||| | Sbjct 13201 TATTTGTATTTCTCTGAGAAAAT-TTACTGCCAAGTTTTCCATAACAATACCATCACTTG 13259 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 || || ||||| ||||||||||| || |||||||||||| || || ||| | | || Sbjct 13260 CAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTCTTTAAGACTTTCCC 13319 Query 18633 ATTCATCT-ATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 | || ||| ||||| | ||||||| |||||| | |||||| |||| ||||||| Sbjct 13320 AGTC-TCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCC 13378 Query 18692 TGTTTGTACAT 18702 | ||| ||||| Sbjct 13379 TTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871478541200