Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 163 6e-35 seq45 159 7e-34 seq37 125 1e-23 >seq6 Length=322908 Score = 163 bits (180), Expect = 6e-35 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | |||||||||||| | |||||||| || ||||| | ||| || |||||| || Sbjct 207090 AATTACACCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTA 207031 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||||||| |||| |||| |||||||| || ||||||||||| || | ||||||||| Sbjct 207030 ATCAGATAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATC 206971 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || || || || ||||| || || || |||||||| |||| ||| || | Sbjct 206970 AGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGG 206911 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||| ||||| | || ||||| || || |||| ||||||| ||| || ||||| || || Sbjct 206910 TTCAACTTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATCTTTTT 206851 >seq45 Length=133594 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || | |||||||||||||| |||| |||||| || || |||||| Sbjct 54837 ATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCA 54778 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || ||||| || || |||||||| || | |||||||||||| Sbjct 54777 GAGAGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 54718 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || ||||| |||| |||||| | ||| Sbjct 54717 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCA 54658 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || || || || || || || |||| ||| |||||||| || Sbjct 54657 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | |||||||| |||||||| | |||||| || || |||||| Sbjct 55293 ATTCCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 55234 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 55233 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55174 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || ||||| |||| |||||| | || Sbjct 55173 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCA 55114 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| ||||| || || || || || |||| || |||||||| Sbjct 55113 ACTTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || | |||||||||||||| |||| |||||| || || |||||| Sbjct 55065 ATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCA 55006 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 55005 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 54946 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||| || || |||||||| || || || || || || | |||||| | || Sbjct 54945 GGTATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCA 54886 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| || || || || || || | || |||||||| Sbjct 54885 ACTTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq37 Length=17717 Score = 125 bits (138), Expect = 1e-23 Identities = 472/731 (65%), Gaps = 28/731 (4%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAA-TTCATACCCAATA 49707 |||||| || || |||||||||| |||||| | ||| || || | | |||||||| |||| Sbjct 12676 TAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACC-AATA 12733 Query 49708 ATTTAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 | | || | || | |||| || ||| | | |||| | ||| ||||||| | || Sbjct 12734 AGATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATATG 12793 Query 49767 atcataattatattattttt--tgataatttatatttaatatgattcgcatatattaaAC 49824 || | || | | | || ||||||| |||||| || ||||| ||||| Sbjct 12794 AT--TTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTT---ATATACTAAAC 12848 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | |||||||||| ||||| || || || | |||| ||||||| ||| || | || Sbjct 12849 AGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGTC 12908 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 | ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | | Sbjct 12909 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 12968 Query 49945 TACCCTCGACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 | ||||||||| | || ||| | || |||||| | | || || ||| ||| Sbjct 12969 TTCCCTCGACAG-CACAGAATCCAATAATTCTTTCAGCGAAAG---ATCGCTCAG--AAT 13022 Query 50004 --ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||| || | ||||| ||||| || || || | | |||| || |||| Sbjct 13023 TCATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAACTGCTTCAATATGAGAAATTGCTT 13082 Query 50062 TAAATAATTCAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 ||| | ||||| ||| | || | || ||||| Sbjct 13083 CAAAAAG--CATTTGGCGTTCTTTAATTTCAGTGATATATCTATCAATAAGTAGTGAATA 13140 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 ||||| ||||| || |||| |||||||| | |||| | || ||||| | Sbjct 13141 AGTTTCACTATGTATTTGCTCAATAGACATTTGAAAAGCATAATACATCCTGGCTTCCGG 13200 Query 50180 ATACTGAACTTCG--GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 50237 || | ||| || || | | | | | || || || |||||||||||| | Sbjct 13201 TATTTGTATTTCTCTGAGAAAATT--TACTGCCAAGTTTTCCATAACAATACCATCACTT 13258 Query 50238 GCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 50297 || || |||||||||||||| ||||| ||||||||||||||| ||||| | | ||||| Sbjct 13259 GCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGGTCTTTAAGACTTTCC 13318 Query 50298 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 || | || ||| | | ||| | |||||| | ||||||||||||| ||| Sbjct 13319 CAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAAAATGATGCTTCGGCC 13378 Query 50358 TTTTTATACAT 50368 ||||||||||| Sbjct 13379 TTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479281021950