Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq45 158 2e-33 seq6 143 5e-29 seq37 105 1e-17 >seq45 Length=133594 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||||| |||||||| |||||||| | |||||| ||| || ||||| Sbjct 55293 ATTCCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 55234 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 55233 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 55174 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || || ||||| ||||||||||| | || Sbjct 55173 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCA 55114 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| ||||| || || || || || |||| ||| |||||||| Sbjct 55113 ACTTCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || |||| |||||||||||||| |||| |||||| ||| || ||||| Sbjct 54837 ATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCA 54778 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || ||||| || || ||||| || || | ||||| |||||| Sbjct 54777 GAGAGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 54718 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || || ||||| ||||||||||| | ||| Sbjct 54717 GGAATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCA 54658 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| || || || || || || || |||| || |||||||| || Sbjct 54657 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || |||| |||||||||||||| |||| |||||| ||| || ||||| Sbjct 55065 ATACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCA 55006 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 55005 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 54946 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| || || |||||||| || || || || || || |||||||| | || Sbjct 54945 GGTATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCA 54886 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||| || || || || || || | ||| |||||||| Sbjct 54885 ACTTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 143 bits (158), Expect = 5e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| |||||||| || ||||| | ||| || ||||| ||||| || Sbjct 207084 ACCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGA 207025 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || || || | || |||||||| || |||||||| || || | |||||| ||||| || Sbjct 207024 TAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGG 206965 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| || || || |||||||| |||||||| || | ||| || Sbjct 206964 AATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAAC 206905 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||| | || ||||| || || |||| ||||||| || || ||||| || || Sbjct 206904 TTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCATCTTTTT 206851 >seq37 Length=17717 Score = 105 bits (116), Expect = 1e-17 Identities = 304/454 (67%), Gaps = 19/454 (4%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| ||||| ||| | |||||||| ||||| || || || | | ||| || | | Sbjct 12558 TTTGATATTCTCCGACTCTCTTTTCGAAGAAGTTAGTCTTGCCCTGGAGTGAAATGAGGT 12617 Query 38893 TCATAAAATCAAATGGATTTTTGGTA--TTATAATATTTTTCTCCTATC-AATACATATA 38949 ||| |||| || ||||| || | || | |||||| ||| || | | | Sbjct 12618 CCATCCAATCGAAAGGATT---GGAAACTTTGTAGATTTTTGGAACATCCAAGGCGAAAA 12674 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAA-TTCATACCCAAT 39008 |||||| || || |||||||||| |||||| ||| || || | | |||||||| ||| Sbjct 12675 GTAATCTGTCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAGTTCATACC-AAT 12732 Query 39009 AATTTAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 || | || | || | |||| || ||| | | |||| | ||| ||||||| | || Sbjct 12733 AAGATCAACAGGAAGAGAATCACAAAGAAAGTTTCTTTCGACTTCAACAGCTTCTGATAT 12792 Query 39068 tatcataattatattattttt--tgataatttatatttaatatgattcgcatataGTAAA 39125 || | || | | | || ||||||| |||||| || ||||| |||| Sbjct 12793 GAT--TTGTTGCACTCTAGGGACTGGTAATTTAAATTTAAGGGCCTT---ATATACTAAA 12847 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||||| | ||||| ||||| || | |||| ||||||| ||| || | | Sbjct 12848 CAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAATAAGTTCATTAGAAAATGTGAGT 12907 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 || ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | Sbjct 12908 CCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGA 12967 Query 39246 ATACCCTCCACA-CACGCAAATGCTATTATTCTT 39278 || ||||| ||| ||| ||| | || |||||| Sbjct 12968 ATTCCCTCGACAGCAC-AGAATCCAATAATTCTT 13000 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 39525 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTA 39584 |||||||||||| ||| || |||||||||||||||||||| ||||||||||||||| Sbjct 13244 ACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTTTTTCAGGG 13303 Query 39585 TCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAA 39644 ||||| | | ||||||| | || ||| | | ||| | |||||| | |||| Sbjct 13304 TCTTTAAGACTTTCCCAGTCTCTAATATCATGACTCAGATCAATTTCTTCAGTAACCCAA 13363 Query 39645 AAAGATGCTACGGATTTTTTATACAT 39670 || |||||| ||| ||||||||||| Sbjct 13364 AATGATGCTTCGGCCTTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135355090600