Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 170 6e-37 seq46 154 4e-32 seq41 87.8 5e-12 >seq2 Length=732862 Score = 170 bits (188), Expect = 6e-37 Identities = 359/526 (68%), Gaps = 27/526 (5%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 607923 TCCTATCAAATCTTCCTGGACGTGTTAATGCGGGATCTAATACATCAGAACGATTTGTTC 607982 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| |||||||||||||| | | ||| ||| Sbjct 607983 CTGCTAAAACTATTACTCCATTAT-TTTCTTTAAATCCATCCATTTCTACAAGAATCTGA 608041 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCG--CTCCttt 289024 ||||| || ||| ||||||||||| || |||| || | |||| | ||||| Sbjct 608042 TTAAGAGTGCTTTCTCTTTCATCATTAGA------TGAAGCAGCA-AATCCACCCCCTTT 608094 Query 289025 t------tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTG 289076 | || | ||||| ||||||||||| ||||| |||| | || ||||| || Sbjct 608095 TGCACGCTTCCTTCCAACCGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTT 608154 Query 289077 TCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 ||| || || ||||||||||||||| | ||| || | |||||| | || || | Sbjct 608155 TCTTGCTTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAAT 608214 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 ||| ||| | |||| | || |||| |||||| ||||| || || || ||| | || Sbjct 608215 AAAATCACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCCTTTGC 608274 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 | | ||| ||||| || || |||||||| |||||| | | |||||||||| ||||| Sbjct 608275 TAATAATGTTTTACCGGTACCTGGTGGTCCTACTAATAAAGCACCCTTTGGTATCTTTGC 608334 Query 289257 CCCAGCAGACTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTT 289312 ||| || ||| || ||| | || || ||||| ||||| || | ||| | | || Sbjct 608335 ACCAACA-TCTTGAAATCTTTTT---GGATCTTTTAAGAATTCCACCAATTCATATATTT 608390 Query 289313 CATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 | | ||| || || | ||| || | |||| ||| ||||||| Sbjct 608391 CTTGTTTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 608436 >seq46 Length=385502 Score = 154 bits (170), Expect = 4e-32 Identities = 783/1229 (64%), Gaps = 48/1229 (4%) Strand=Plus/Minus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 || ||||| ||| |||| || ||||||||| | |||||| | | | ||||| |||| Sbjct 13344 TCAAGAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCC 13285 Query 155373 GATGTAAATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCG 155432 || ||| | | | | | | ||| ||| || | ||| |||| ||||| || Sbjct 13284 GACTCGTATGGTAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCC 13225 Query 155433 ACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGGTAAAAATTC--ACAT 155490 | ||| |||||||| |||| | | || ||||| | | | | || || || | Sbjct 13224 AATGGACGATGCCTTAAATT-CGATTTTTTACATTCTT-TAAGAGAATAATATCCAACGT 13167 Query 155491 CAATAATGTTATTTAAATT---TGTAACCAATACCTTGGTTACGTCTGCTAATTTCACAT 155547 |||| || ||||| ||||| ||||| || |||| || || ||| ||| || || Sbjct 13166 CAATTATTTTATTCAAATTCCTTGTAATCA---CCTTTGTAACTTCTTTTAACTTATCAA 13110 Query 155548 AGTCAAATGTTTTATCCTCATTT---ACAAACATACCAAGACCAATAGACGCCAGATTAC 155604 | ||||| || || | | || |||||| | ||| ||||||||||||||||||| Sbjct 13109 AATCAAACGTCTTGTTATTTTTGTCAACAAACTTTGGAAGGCCAATAGACGCCAGATTAC 13050 Query 155605 ATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCTCACAGCACAGGTTAGAAC 155661 | || ||| || ||| | || ||| || | || ||| ||| | |||| Sbjct 13049 AAACGGCAACTTC---GTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTA---- 12997 Query 155662 TCTTGA-----TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTA 155716 ||||| | || || ||||| ||||| ||| |||||| || |||||| || || Sbjct 12996 -CTTGAGACAATAGTACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATA 12938 Query 155717 TAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACG 155776 ||| |||| ||||| ||||| || || || | || || | ||| || | | Sbjct 12937 ACAAATAAATGGTGTTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAAGTTTCTG 12878 Query 155777 GGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGG 155834 || || || || | | ||||| |||||| | ||||||| || ||| Sbjct 12877 CGCTTTCATCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATA--GC-TTCTT 12821 Query 155835 TAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA 155893 || || ||||| || ||| || ||| ||| | ||| ||||| | || | ||| Sbjct 12820 AAAGTCATCACCCCAAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCA 12761 Query 155894 AATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAA 155951 | || || || || || | |||||| || | |||| |||| | ||| || Sbjct 12760 ATCTTGAT--CCTTTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAG 12703 Query 155952 AGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 || || | | | | | ||| || | |||||||| |||| | || | || || | Sbjct 12702 AGATCGCGA-CATCTCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTAC 12644 Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACC 156067 || |||| || || |||| ||| || |||| ||| || | ||| || ||| Sbjct 12643 AACATCAACGTGCCACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACC 12584 Query 156068 CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGA 156127 ||||| | ||||| |||||| | ||| | |||| | ||| ||||| | || ||||| Sbjct 12583 TTGATCAATATACCTAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGA 12524 Query 156128 AGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCC 156187 | ||||| || || ||||||| ||||||| | | || |||| | | ||| Sbjct 12523 CCTTCCATTTGTCCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCC 12464 Query 156188 AATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTC 156247 || ||||||| ||| ||| | ||||||| ||| || | |||||||| | Sbjct 12463 AAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAATGTGTCAAAAATACCGTT 12404 Query 156248 AATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCC 156307 || ||||| ||| || |||| | | || || | |||||||||||| || || Sbjct 12403 TATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCC 12344 Query 156308 AGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 | || || ||||| |||||||||||| ||||||| || | || | | |||||||| Sbjct 12343 TGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGT 12284 Query 156368 CTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 ||| | | || |||| || | | |||||| | ||| |||| |||| | | Sbjct 12283 CTCAAGTGCAGCT--TCAATATCACCACAGTGAATCCCACAAGAAACCCGCATCAGAAGA 12226 Query 156426 TGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTT 156485 ||||| || | || |||| |||||| ||||| || | | |||||| ||| Sbjct 12225 TGCTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCCAGGGTT 12166 Query 156486 TTAAACCCGAAATAATCAAACAGAAAATC 156514 || || | ||||||||| | |||||| Sbjct 12165 TTGAAGGCAAAATAATCATATTCAAAATC 12137 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| |||||| | |||| | ||| ||| | ||| |||||||||||||| || ||| Sbjct 181293 GAAATAAAGAAGTCGTATAGAAAACTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 181234 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 181233 AATAGAGAAGAAGCCGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 181180 >seq41 Length=345200 Score = 87.8 bits (96), Expect = 5e-12 Identities = 235/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 ||||| || || || || ||||| ||||| || | | || | || || || ||| Sbjct 270413 ATTCCATCTTCTCCATAAAGGAAT--TGAATAATATCGCCATTACTGTTCCTAACAGTCC 270470 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | |||| || ||||| ||| |||| | | || ||||| || | Sbjct 270471 TATCATATTGCACCATACAATCCTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTG 270530 Query 302612 TTGTAGATGTTTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || || ||||| ||| || |||||||| | || | | ||| ||||||||||| || Sbjct 270531 TTTCTGAAGTTTT-ACACGCAGTATCAATGATTCCTTCTCTACCTCCCATAGCATGAAAA 270589 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | ||| || || || | | ||| || ||| |||||||| || Sbjct 270590 AAAACTTCCTGAGGTGTAAGTCCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCC 270649 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 || | ||| | || ||| ||||||| | | || | | | | || |||| ||| Sbjct 270650 GGTCCGTAGTCATATTTCAAAAAATGTGGCAAGCTTCTATCCCTAAATCCAAATGGAATA 270709 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 ||||| || ||||| || |||||||| | ||| | || ||||| |||||||||| Sbjct 270710 CGCTTACCTTCAACATTTTGCTGTCCAACGCATGCCATAATCTGTGAAATATTTA 270764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816525113209