Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq11 105 8e-18 >seq11 Length=225008 Score = 105 bits (116), Expect = 8e-18 Identities = 266/401 (66%), Gaps = 24/401 (6%) Strand=Plus/Plus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAAC 166010 |||| ||||| |||||| ||| |||||||| ||||| | | |||| | ||||| ||| Sbjct 75226 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 75285 Query 166011 AAAATTTATGTGAAACTATAATT---AAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 166067 | ||| ||| || |||| || | || ||| |||||||||| | |||||| Sbjct 75286 CATCATTAC---AAAGTACAATTGTTAATATGGCACAAAATTTTGTTGGAAGTAATAATC 75342 Query 166068 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 166125 || |||| || || |||||||||||||| ||| ||||| || |||||| | Sbjct 75343 TAAATCTACTAGAGCCATGTGGTCAATTTGGTAGTAGAAAGGAAGGTGGAAAAGATGCAA 75402 Query 166126 -TGCTGCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAG 166184 |||||| || | ||||| | ||| |||| | |||| | |||||| || || Sbjct 75403 GTGCTGC-TC--GTTATATATTTACTAAACTATCTAAATGGACTAGATATATTTTCCCAG 75459 Query 166185 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTC 166232 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 75460 AGGCTGATGATCCTTTATTAACTTATTTGTATGATGATGGACAACAAATTGAACCTTTAT 75519 Query 166233 ATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 166292 ||| | ||| |||| ||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 75520 ATTACGTACCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 75579 Query 166293 GGTCATGTTTTATACCTCAATATAATCCTTTAGAATTAATT 166333 || ||| | ||| | |||||||| ||| ||||| Sbjct 75580 GGAGTAGTTCAGTTCCTAATTATAATCCAAAAGATATAATT 75620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489149351160