Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq45 125 6e-24 seq6 86.0 5e-12 >seq45 Length=133594 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | || || ||||| | || || |||||||||||||| ||||| | Sbjct 54834 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 54775 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | ||| || | ||| || || ||| | ||||| | ||| ||||| || ||| Sbjct 54774 AGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 54715 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| |||| || ||| | || | ||| || ||| |||| || Sbjct 54714 ATTCCTTCCTTATCTTG-AATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAAC 54656 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| | ||| ||||| || || || || || |||||||| |||||||| || Sbjct 54655 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 54605 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| |||||||||||||| ||||| | | || | | ||| || | |||||| || Sbjct 55260 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 55201 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | ||||| | ||| ||||| || ||||| || || || ||||| ||| |||| || Sbjct 55200 GCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTG-AATCTTTGCCTT 55142 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | ||| || ||| | || ||||| | ||| || || || || || ||||| Sbjct 55141 AACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGATGGTCTTTCCTGTCAAGGT 55082 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| || |||||||| Sbjct 55081 CTTAACGAAAATCTGCAT 55064 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | || || ||||| | || || |||||||||||||| ||||| | Sbjct 55062 CCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAG 55003 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | |||||| || ||| | ||||| | ||| ||||| || || Sbjct 55002 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGT 54943 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || ||||| ||| |||| || || | || | || || ||| | || || Sbjct 54942 ATCCCCTCCTTATCTTG-AATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAAC 54884 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || || || || || || || || || || |||||||| Sbjct 54883 TTCCAAAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || || || ||||| | | || | ||| || | ||| || ||| Sbjct 207053 GTGGACTCCTTCTGGATATTGTAATCAGATAGAGTTCTGCCATCTTCCAATTGCTTTCCA 206994 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | ||||| | || ||||| || ||||| ||||| || || || | ||| || Sbjct 206993 GCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTATCCTGGATCTTTGCCTTT 206934 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| | || | ||| || ||| |||| ||||| | || || || || || |||| ||| Sbjct 206933 ACATTCTCAATAGTATCCGAAGGTTCAACTTCCAATGTGATGGTCTTCCCTGTTAGAGTT 206874 Query 29770 TTAACAAATATCTGCATTTT 29789 |||||||| || ||||| || Sbjct 206873 TTAACAAAAATTTGCATCTT 206854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218932393037