Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq45 203 6e-47 seq6 196 9e-45 >seq45 Length=133594 Score = 203 bits (224), Expect = 6e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || |||||||| | ||| || ||||| || || || |||||||| Sbjct 55290 CCGCCTCTAAGTCTCAATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 55231 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||||||| || |||| ||||||||| |||||||| | | ||||||||| || || Sbjct 55230 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGA 55171 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 55170 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACT 55111 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| |||||||| ||||| || || |||||||| Sbjct 55110 TCTAAAGTGATGGTCTTTCCTGTCAAGGTCTTAACGAAAATCTGCAT 55064 Score = 201 bits (222), Expect = 2e-46 Identities = 170/209 (81%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || | ||||| ||||| || || || |||||||| || ||||||| || ||| Sbjct 54816 ACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCATCCTCT 54757 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| ||||| |||||||| | | ||||||||| || || |||||||||||||||||| Sbjct 54756 AATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCTTGA 54697 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| || ||||| || || ||||| |||||| ||||||||||| || ||||| Sbjct 54696 ATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTT 54637 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| |||||||| Sbjct 54636 CCTGTCAAAGTCTTAACAAAAATCTGCAT 54608 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || | ||||| ||||| || || || |||||||| ||| ||||||| || ||| Sbjct 55044 ACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 54985 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||| |||||||| | | ||||||||| || ||||| || |||||||||||| Sbjct 54984 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGTATCCCCTCCTTATCTTGA 54925 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| || || || ||||| ||||| ||| || ||||||||||| || ||||| Sbjct 54924 ATCTTTGCCTTAACGTTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATGGTCTTT 54865 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || || |||||||| Sbjct 54864 CCCGTCAAAGTCTTGACGAAAATCTGCAT 54836 >seq6 Length=322908 Score = 196 bits (216), Expect = 9e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || |||||||||| ||| || || ||||| ||||| |||||||| Sbjct 207084 ACCACCTCTAAGTCTCAATACTAAGTGCAAAGTGGACTCCTTCTGGATATTGTAATCAGA 207025 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| |||| || ||||| | ||| |||||||||||||| | | |||||||| ||||| Sbjct 207024 TAGAGTTCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGCTGTTGATCAGGAGG 206965 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || |||||||| || |||||||| |||||||| ||||| ||||| |||||| || Sbjct 206964 AATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCCGAAGGTTCAAC 206905 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| ||||| | || || ||||| || ||||| Sbjct 206904 TTCCAATGTGATGGTCTTCCCTGTTAGAGTTTTAACAAAAATTTGCAT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826482959323