Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 109 1e-18 seq46 98.7 2e-15 >seq11 Length=225008 Score = 109 bits (120), Expect = 1e-18 Identities = 328/499 (66%), Gaps = 18/499 (4%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || |||||| |||||||||| | ||| || |||||| | | | |||||||| Sbjct 75090 GATTTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCA 75149 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCA 279920 ||||| | |||||||| |||||| ||| | || | || || ||| ||| | Sbjct 75150 AATTTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACCTTTAA 75205 Query 279921 AAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG 279980 ||| || || ||| | || || ||||| || ||||| ||||||||| | |||||| Sbjct 75206 AAAAAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATA 75264 Query 279981 CAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT 280040 | ||||||||| || ||| | || | ||| || | ||||| | | || ||| ||| Sbjct 75265 GTGCTTATCATCATGGAGAATCATCATTACAAAGTACAATTGTTAATATGGCACAAAATT 75324 Query 280041 TTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTC 280100 || | | || || ||||||| || ||| ||||||||||||| | | | Sbjct 75325 TTGTTGGAAGTAATAATCTAAATCTACTAGAGCCATGTGGTCAATTTGGTAGTAGAAAGG 75384 Query 280101 ACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAA 280160 | |||||||||| || ||||||||| ||| ||| || || || | Sbjct 75385 AAGGTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTACTAAACTATC---TA-AATGG 75440 Query 280161 ACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGT 280216 || || ||| || || | ||||| || ||| |||| | | | |||||||| Sbjct 75441 ACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTGTATGATGATGGA 75500 Query 280217 CTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCT 280276 | |||||||| |||||| | ||||| || || |||||| | || |||||| || Sbjct 75501 CAACAAATTGAACCTTTATATTACGTACCAATAATTCCAATGATTTTGGTAAATGGTACT 75560 Query 280277 CAAGGAATTGGAACAGGTT 280295 | |||||||| ||||||| Sbjct 75561 GATGGAATTGGTACAGGTT 75579 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | ||| || ||||| || Sbjct 74334 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCTAAAAAATGTACT 74393 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 74394 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 74453 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAA 279223 ||| | || | | ||| |||||||| ||| | |||||| Sbjct 74454 GGTAGAGACTATTTTGGAGTATTTCCATTACGGGGTAAA 74492 >seq46 Length=385502 Score = 98.7 bits (108), Expect = 2e-15 Identities = 328/502 (65%), Gaps = 9/502 (2%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 334699 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 334640 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||||| ||| || | |||||| || | ||| || ||||| | | || || || Sbjct 334639 GAAGAACTGTTATTTCTCCTGATCCTAATATTGAAGTTGATGAAGTTGTGGTACCTATGA 334580 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| |||| | ||| || | |||||| | | |||||| | | | | Sbjct 334579 TCATTGCAAAGAAATTAACTTATCCTGAAAGAGTTAATGCTATTAATATTGACTCTCTAA 334520 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| | | | ||||| || | |||| || || | Sbjct 334519 GAGAAGCTGTTCTAAATGGACACGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 334463 Query 305226 AGCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGTAA-AATG-CT 305283 | || |||| ||| | | || ||| || || | || | | || | || Sbjct 334462 -GTAATGGAAGCAAATCTAGTCTAAGG-TATGCTAATAGAAGAGTTGTATCAGAACGTCT 334405 Query 305284 TGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAG 305343 ||||||| |||||||| |||||| |||| ||| || | || ||||| Sbjct 334404 TGAAATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTTAATAG 334345 Query 305344 GCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TGGAT 305402 |||||| | |||| | | ||| ||| |||| ||||| || | | |||| Sbjct 334344 ACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTGGTTATGCCATGGAG 334285 Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 || ||| |||| |||| | |||||||| | ||||||||||| |||||||||||||||| Sbjct 334284 A-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTTGATGGAGATG 334226 Query 305463 AAATGAATATGCATGTACCTCA 305484 | |||||| | ||| | ||||| Sbjct 334225 AGATGAATCTTCATCTCCCTCA 334204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811933255777