Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq45 102 5e-17 >seq45 Length=133594 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | | || || ||||||| || ||||||||| ||||||||||| || Sbjct 54835 ACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGA 54776 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || ||||| ||||| ||||| |||||||| || ||||| | || Sbjct 54775 GAGGGTTCTACCATCCTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGG 54716 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | ||||| || | || || | ||| | Sbjct 54715 AATTCCTTCCTTATCTTGAATCTT-TGCCTTAACATTCTCGATAGTATCTGAAGGTTCAA 54657 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| || || || ||||| ||||||||| Sbjct 54656 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATA 54607 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || || |||| |||| ||||||||| ||||||||||| ||||| || | | || Sbjct 55275 AATACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCC 55216 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || ||||||||||| ||||| |||||||| || ||||| | || | ||||| || || Sbjct 55215 TCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATCT 55156 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || || | ||||| || | || || | || || || | ||||| || Sbjct 55155 TGAATCTT-TGCCTTAACATTCTCGATAGTATCTGAAGGCTCAACTTCTAAAGTGATGGT 55097 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| || || || || || ||||||||| Sbjct 55096 CTTTCCTGTCAAGGTCTTAACGAAAATCTGCATA 55063 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | | || || ||||||| || ||||||||| ||||||||||| || Sbjct 55063 ACCACCCCTGAGTCTCAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGA 55004 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 ||| || | | || || ||||||||||| ||||| |||||||| || ||||| Sbjct 55003 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATC 54950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703771653440