Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq45 118 3e-21 seq6 114 3e-20 >seq45 Length=133594 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||||||||||| ||| ||| || Sbjct 54611 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 54670 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||||||| || ||||||||| || || ||| Sbjct 54671 ACTATCGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAACAA 54730 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||| || || ||||| || || | | ||||||||| | Sbjct 54731 CGTTTGATCTTTGCAGGAAAGCAATTAGAGGATGGTAGAACCCTCTCTGATTACAACATT 54790 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || ||||||||||| | || | || |||||||| Sbjct 54791 CAAAAAGAGTCTACCTTACATTTAGTATTGAGACT 54825 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||| ||||| || ||| || || |||| || ||| | Sbjct 55088 ACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCAGATACTATCGAGAATGTTAAGGCA 55147 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||||||| || || ||| | | ||||| || ||||| Sbjct 55148 AAGATTCAAGATAAGGAAGGAATTCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAA 55207 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | ||||||||| | || |||||||| ||| | ||| Sbjct 55208 CAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACAC 55267 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || ||||||||| || Sbjct 55268 TTAGTATTGAGACTTAGA 55285 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || |||||||||||||| || ||| || Sbjct 54839 CAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACTTTGGAAGTTGAGCCTTCAGAT 54898 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || || || || || ||| Sbjct 54899 ACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATACCACCTGATCAACAA 54958 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | ||||||||| | Sbjct 54959 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 55018 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || ||||||||||| | || | || |||||||| Sbjct 55019 CAAAAAGAGTCTACCTTACATTTAGTATTGAGACT 55053 >seq6 Length=322908 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| |||||||| ||| ||| || || | || Sbjct 206872 AAAACTCTAACAGGGAAGACCATCACATTGGAAGTTGAACCTTCGGATACTATTGAGAAT 206931 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 |||||| |||||| || || || || || ||| || || |||| || || ||| Sbjct 206932 GTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGA---TCAACAGCGTTTGATC 206988 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || |||||||| ||||||||||| || ||| | | |||||||| ||||||| ||| Sbjct 206989 TTTGCTGGAAAGCAATTGGAAGATGGCAGAACTCTATCTGATTACAATATCCAGAAGGAG 207048 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||| | ||| | || ||||||||| || Sbjct 207049 TCCACTTTGCACTTAGTATTGAGACTTAGA 207078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819936901497