Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq45 109 4e-19 seq6 84.2 2e-11 >seq45 Length=133594 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||| ||||||||||| || ||||| || ||||| || || ||||| ||||| Sbjct 54605 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 54664 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| || | | | || || ||| ||| || || ||||| | || |||| Sbjct 54665 TCAGATACTATCGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGAT 54724 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | || | ||| || || |||||||| ||| || ||| | |||||| Sbjct 54725 CAACAACGTTTGATCTTTGCAGGAAAGCAATTAGAGGATGGTAGAACCCTCTCTGATTAC 54784 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 ||||| |||||||| ||||| |||||||||||||||| Sbjct 54785 AACATTCAAAAAGAGTCTACCTTACATTTAGTATTGAG 54822 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 54836 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACTTTGGAAGTTGAGCCTTCA 54895 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || || || | || ||||||| Sbjct 54896 GATACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATACCACCTGATCAA 54955 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | ||||||||| Sbjct 54956 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 55015 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || |||||||| ||||| |||||||||||||||| Sbjct 55016 ATTCAAAAAGAGTCTACCTTACATTTAGTATTGAG 55050 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || ||||| || |||||||| || | ||| || || Sbjct 55064 ATGCAGATTTTCGTTAAGACCTTGACAGGAAAGACCATCACTTTAGAAGTTGAGCCTTCA 55123 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || || ||| ||| || || ||||| | || ||||||| Sbjct 55124 GATACTATCGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAA 55183 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | ||||||||| Sbjct 55184 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 55243 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||| || || |||| ||||||||||| | |||| ||| Sbjct 55244 ATTCAAAAAGAGTCCACTTTACACTTAGTATTGAGACTTAGAGGCGGA 55291 >seq6 Length=322908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||| |||||||||||||||||||| | || || |||||||| || ||||| ||||| Sbjct 206853 AAAGATGCAAATTTTTGTTAAAACTCTAACAGGGAAGACCATCACATTGGAAGTTGAACC 206912 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 ||| || ||| | || || ||| || || || || ||| | || ||| Sbjct 206913 TTCGGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGA 206972 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 |||||| | | || | ||| || || ||||| |||||| | |||| | ||||| Sbjct 206973 TCAACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTCTATCTGATTA 207032 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 ||| || || || || || || | || ||||||||||| Sbjct 207033 CAATATCCAGAAGGAGTCCACTTTGCACTTAGTATTGAG 207071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329320506656