Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq46 318 8e-82 seq37 215 7e-51 >seq46 Length=385502 Score = 318 bits (352), Expect = 8e-82 Identities = 1172/1820 (64%), Gaps = 38/1820 (2%) Strand=Plus/Minus Query 68412 ATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTT 68471 ||| || || || ||||| | |||| |||| || || ||||||||| || || || Sbjct 13939 ATAATAAATGCCTGTTTTTAAACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 13880 Query 68472 GGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCC 68531 | | || | | || | ||||| || |||| ||||| |||| | | | || Sbjct 13879 TGCAAAATTGGCATTTTCCATATGGATGTTCAAAGATTGTGATTGACAAACATATGGACC 13820 Query 68532 TCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAAT 68591 |||||||| ||||| | || | ||||||| ||||||||||| ||||||| ||| Sbjct 13819 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAG 13760 Query 68592 CTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAAT 68648 || ||||| || || | | |||||||||| ||| || | || || Sbjct 13759 CTCACGTATATCCTCCGGGATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATGAT 13700 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | | ||| | || ||||| ||| || || |||| | | || | |||||| Sbjct 13699 ATTCTGCTTAAGCTTATCATCCCATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCGG 13640 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG-TAAATATTACTGGTATATG 68767 ||| |||| || || ||||||| || ||||| ||| ||||| || || ||| Sbjct 13639 ATTTACTACAAAGAACTCACCAGATAGTACCCTACG-GTGATAAATGTTTGAAGTGAATG 13581 Query 68768 GTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827 | || | | || || || || | |||||| | ||| || || |||||||| || | | Sbjct 13580 GCTCAAAACTCTCGTTGTTACCTAAAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGATA 13521 Query 68828 CCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCC 68887 |||||| ||| | || ||||| | | ||| ||||||| || | |||||| | Sbjct 13520 TTAATAAAGAATTACGAATACCATATTTGGAAATTCTATCTTTAAGTGAATCCCAATCAC 13461 Query 68888 AAAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCAT 68944 |||| | || ||| ||| ||| | ||| |||||| ||| || ||||||||| Sbjct 13460 AAAGCCCTGAGTCTGGCGTAACTCCCCACATATCAAATTGTAAAATACCTTTACTTGCAG 13401 Query 68945 ATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTA 69004 || |||| ||||||||| || ||||| | | ||| || || ||||| || || || | Sbjct 13400 GAGAACCATAATATGTTTCGTATGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCAA 13341 Query 69005 ATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTA--GACT 69062 || | ||||| || || || || | ||||| | | | ||| | |||| Sbjct 13340 GAGCTGCATAATAGATGACCTCAAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGACT 13281 Query 69063 ATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGAT 69122 || |||| || | | | ||||| || || | || |||| ||||| || | Sbjct 13280 --CGTATGGTAAACGAAGCATCATAAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAA 13223 Query 69123 AGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 69182 || | ||| || ||| || ||| | |||| || || |||||| || || || Sbjct 13222 TGGACGATGCCTTAAATTCGATTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAAT 13163 Query 69183 AATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA 69242 |||||||| | ||| | | || || || || |||| || ||||||||| Sbjct 13162 TATTTTATTCAAATTCCTTGTAATCACCTTTGTAACTTCTTTTAACTTATCAAAATCAAA 13103 Query 69243 TCGTCCATCTAT-------AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTG 69295 |||| ||| ||||||| | || | | ||| || ||||||||||| | Sbjct 13102 -CGTCTTGTTATTTTTGTCAACAAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGG 13044 Query 69296 CTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAG 69355 | || || | | | | | || | || || || || |||| ||||| | |||| Sbjct 13043 CAACTTCGTCCGCACTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATAG 12984 Query 69356 TCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAG 69415 | |||| ||||| ||||||||| || | || || || || ||| |||||| || | Sbjct 12983 TACCCAAATTTTTCTGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGTG 12924 Query 69416 TACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGG 69475 | || || ||||| |||| | | || | ||||| | || || || || Sbjct 12923 TTCCCGTCTCAATTTGAGCCTGCAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CGT 12866 Query 69476 T---CTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCC 69532 | ||| | || | | ||| ||||| | | ||||||| | || ||||| |||| Sbjct 12865 TTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCCC 12807 Query 69533 AAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCT 69592 ||||||| | |||||| ||||||| || ||||| | | ||| ||| | ||||| Sbjct 12806 AAACATCTTGCAATCCCCTGCATTCATCCGGGCACATTAGAGTCCA---ATCTTGATCCT 12750 Query 69593 T---AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTC 69649 | ||||| | ||| || ||||| |||| ||| || || ||||||||| | || Sbjct 12749 TTTCAACTCTCTCCATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATC 12690 Query 69650 TATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCC 69709 | | ||||| || || |||||| ||| || | |||||| | || |||| |||| Sbjct 12689 TCATCTCTTCCTTCCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCC 12630 Query 69710 ATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATC 69769 | ||||| | ||| || || ||| | || || || ||| || ||||| || || | Sbjct 12629 ACGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACC 12570 Query 69770 TGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTC 69829 | ||||||| |||||| || | || ||||||||| | || || || | |||||||| | Sbjct 12569 TAGCAGTGTCATTATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCC 12510 Query 69830 CAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCA 69889 | |||||| || || | | ||||||||| | | | || | || ||||| Sbjct 12509 CTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACTCCAAGGCCACCTGCAG 12450 Query 69890 TTTTA--GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATC 69947 | ||| | || | ||| ||| ||||||||| | ||||| | ||| ||| || Sbjct 12449 TCTTACTAATGTTTGCGCATTTAGTT--AATGTGTCAAAAATACCGTTTATTGAATCTTC 12392 Query 69948 TATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAA 70007 | || | || | |||||| ||||||||| | || || || | |||||| | Sbjct 12391 TGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGCGTGCCTGAATTAAAGAG 12332 Query 70008 TGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGA 70067 ||| || | ||| ||||| || |||||| || | || | |||||| |||| || | Sbjct 12331 TGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCGTATGTCTCAAGTGCAGC 12272 Query 70068 TTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTT 70126 ||| ||||| |||| | ||||| || | || ||||||| | |||||| |||| || Sbjct 12271 TTCAATATCACCACAG-TGAATCCCACAAGAAACCCGCATCAGAAGATGCTGTGGTCTTT 12213 Query 70127 CTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAAT 70186 | || ||| || | ||||| | || || ||| ||||||| ||||| || |||||| Sbjct 12212 CCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCCAGGGTTTTGAAGGCAAAAT 12153 Query 70187 AGTTGTATGAAAAGTCTCTT 70206 | | ||| ||| ||| || Sbjct 12152 AATCATATTCAAAATCTTTT 12133 >seq37 Length=17717 Score = 215 bits (238), Expect = 7e-51 Identities = 583/878 (66%), Gaps = 37/878 (4%) Strand=Plus/Plus Query 39301 ATCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAA 39357 ||| ||||| |||| || ||||| |||| ||||| || || | || ||||| || Sbjct 12529 ATCATCTTGGTTGACCATGACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCGAAGAA 12588 Query 39358 ATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATA 39417 ||||| ||||| | | ||| || ||||| |||| || ||||| | | || || Sbjct 12589 GTTAGTCTTGCCCTGGAGTGAAATGAGGTCCATCCAATCGAAAGGATTGGAAACTTTGTA 12648 Query 39418 tttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTT 39476 ||||| || |||| || | ||| ||||| || ||||||||||| || ||| Sbjct 12649 GATTTTTGGAACATCC-AAGGCGAAAAGTAATCTGTCAGCAACAAATTCAATATATTGGG 12707 Query 39477 TCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTT 39536 ||| | | | ||||| || || || | ||| || |||| || ||||| | | Sbjct 12708 CCATAAGTCTCGAGTTCATACCAATAAGATCAACAGGAAGAGAATCACAAAGAAAGTTTC 12767 Query 39537 TTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCA 39596 |||||| || || || |||| ||| || |||| | || ||| ||| | | Sbjct 12768 TTTCGACTTCAACAGCTTCTGATATGATT--TGTTGCACTCTAGGGACT-GGTAATTTAA 12824 Query 39597 ATAAATGT---TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAA 39653 || | | ||| | | ||| ||||| || ||| ||||||||| ||||| | |||| Sbjct 12825 ATTTAAGGGCCTTATATACTAAACAGGCAAAATCAGCATGTAGGCCTTCATCACGGCTAA 12884 Query 39654 TTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGG 39713 | | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || | Sbjct 12885 TAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG 12944 Query 39714 CAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 || |||||| | |||||||| | || || || || || ||| ||| || ||| || Sbjct 12945 CA-CAAAAGCTACCAGAAAATAGAATTCCCTCGACAGCACAGAATCCAATAATTCTTTCA 13003 Query 39773 CCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAA 39832 || || | ||| || ||||| || |||||| || || |||||||| || Sbjct 13004 GCGAAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCCTTCTTCTTAAC---- 13059 Query 39833 GGCATTGTTTCTATA---------GCATTAAAGAGATAATGTTTTTCATCACTATCTTTA 39883 || ||| ||| || | ||| || || ||| | | | || | Sbjct 13060 -----TGCTTCAATATGAGAAATTGCTTCAAAAAGCATTTGGCGTTCTTTAATTTCAGTG 13114 Query 39884 ACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGA 39943 | |||| |||| || | || ||| |||| ||| || | ||||| | ||| ||| Sbjct 13115 ATATATCTATCAATAAGTAGTGAATAAGTTTCACTATGTATTTGCTCAATAGACATTTGA 13174 Query 39944 AATCCGTAAAAACAT-CTTGCTTCAGTAATTTGTA--CCTCTGAACAAAATCTTTCCGCC 40000 || | | || |||| || ||||| | ||||||| ||||| | ||||| || | ||| Sbjct 13175 AAAGCAT-AATACATCCTGGCTTCCGGTATTTGTATTTCTCTG-AGAAAAT-TTACTGCC 13231 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAA 40060 || ||||| | || || |||||||| || ||||| ||||| || |||| ||| |||||| Sbjct 13232 AAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAA 13291 Query 40061 TATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 40120 | ||||||| | | | | | | |||||| | ||||| | | ||| | |||| Sbjct 13292 TGTTTTTCAGGGTCTTTAAGACTTTCCCAGTCTCTAATATCATGACTCAGATCAATTTCT 13351 Query 40121 TCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 |||| |||||| || || || |||||||| ||||| Sbjct 13352 TCAGTAACCCAAAATGATGCTTCGGCCTTTTTATACAT 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908310577480