Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq37 109 4e-19 >seq37 Length=17717 Score = 109 bits (120), Expect = 4e-19 Identities = 373/566 (66%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 ||||| ||| ||||| ||||| || | || ||||||||| | |||||| ||||| Sbjct 13401 GACATTTGGTCGATGTATAAAAAGGCCGAAGCATCATTTTGGGTTACTGAAGAAATTGAT 13342 Query 43787 TTGACTAAAGAC-TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATC 43845 ||| | | || |||| | ||| | ||||| | | |||||||||||||| Sbjct 13341 CTGAGTCATGATATTAGAGACTGGGAAAGTCTTAAAGACCCT-GAAAAACATTTTATCAA 13283 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 | ||||| || || |||||||| || || || || || | ||||| |||| ||| Sbjct 13282 ATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTGGC-AGTAA 13224 Query 43906 GTTTGCGCA-AGAAGTTCAATTACCAGAAGC-ACGATGTTTTTATGGGTTTCAAATTGCC 43963 ||| | || |||| | ||| |||| ||||| | ||||| || ||| |||||||| | Sbjct 13223 ATTTTCTCAGAGAAATACAAATACCGGAAGCCAGGATGTATT-ATGCTTTTCAAATGTCT 13165 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || || | || ||| |||| || || || || |||| || |||| || Sbjct 13164 ATTGAGCAAATACATAGTGAAACTTATTCACTACTTATTGATAGATATATCACTGAAATT 13105 Query 44024 CACGAGAAGC--ATCGATTGTTTAATGCGATAG---AAACAGTACCTGCGATTAAACATA 44078 | || | || | | || || || || || | | | | | | |||| | | Sbjct 13104 AAAGA-ACGCCAAATGCTTTTTGAA-GCAATTTCTCATATTGAAGCAG---TTAAGAAGA 13050 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCG 44138 | ||||| ||||| ||||||||| ||||| | ||||| | ||| || || | | Sbjct 13049 AGGCAGAATGGGCAACTAAATGGATGAATTCTGAGCGATCTTTCGCTGAAAGAATTATTG 12990 Query 44139 CGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTA 44197 || | ||| || || ||| | ||||| || | | |||| | | || |||||| | Sbjct 12989 GATTCTGTGCTGTCGAGGGAATTCTATTTTCTGGTAGCTTTTGTG-CAATTTTTTGGCTT 12931 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 || ||||| || | |||||||| | || ||||| ||||| | || || ||||||||| Sbjct 12930 AAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGCCGTGATGAA 12871 Query 44258 GGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||| || || Sbjct 12870 GGCCTACATGCTGATTTTGCCTGTTT 12845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455723892285