Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq46 105 6e-18 seq45 84.2 2e-11 >seq46 Length=385502 Score = 105 bits (116), Expect = 6e-18 Identities = 858/1365 (63%), Gaps = 47/1365 (3%) Strand=Plus/Minus Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597 ||||| | ||||| |||||| || | | | ||||| ||||||||||| || | | Sbjct 13854 ATGTTCAAAGATTGTGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAATTACT 13795 Query 130598 GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657 || || | || || |||||| | ||||| || || || | || | | || || Sbjct 13794 GTCTTTTGCTTAATTTCCCAAACAGTCTTATAAAGCTCACGTATATCCTCCGGGATTGTA 13735 Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAAT-TTCGTTGCGCATACTTTT-ATCGT 130715 || ||||| || || || || || || || ||| ||| | ||| | ||| Sbjct 13734 AGTATATTTTGAATACTGCCATTATTTGCAATGATATTC--TGCTTAAGCTTATCATCCC 13677 Query 130716 ACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAG 130775 | || ||||| | || | ||| |||| ||||| ||| | | || ||||||| Sbjct 13676 ATAACCCAAGTTCTAGTAAATCATTTAGTAAATGCGGATTTACTACAAAGAACTCACCAG 13617 Query 130776 CCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGA 130835 || || | | |||||||| ||||| || ||||| |||||||| || | Sbjct 13616 ATAGTACCCTACGGTGATAAATGTTTGAAGTGAATGGCTCAAAACTCTCGTTGTTACCTA 13557 Query 130836 ATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGT 130895 | ||||||| || | || || ||||| | | ||||| ||||||||||| ||| | Sbjct 13556 AAATTTGTGAAGTGGAGGCTGTTGGCATTGGAGATATTAATAAAGAATTACGAATACCAT 13497 Query 130896 GCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGT 130955 | | ||| | || | | ||||||||| || || | || || | | Sbjct 13496 ATTTGGAAATTCTATCTTTAAGTGAATCCCAATCACAAAGCCCTGA--GTCTGGCGTAAC 13439 Query 130956 TCC--ACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTA 131013 ||| ||||||||||||||| || |||||||| || ||| | | | |||||| Sbjct 13438 TCCCCACATATCAAATTGTAAAATACCTTTACTTGCAGGAGAACCATAATATGTTTCGTA 13379 Query 131014 GATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTC 131073 ||| | || || || |||||| || | |||| | ||||| ||| || Sbjct 13378 TGGTCCATATTTTTCCGCAAGCTCACAGCTAGCGTCAAGAGCTGCATAATAGATGACCTC 13319 Query 131074 GGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAAT 131133 ||||||||||| |||| || ||| | |||||| || || | | || Sbjct 13318 AAAGATTTGTTTATTCAATTTCTTAGCTCCCTCCGACTCGTATGGTAAACGAAGCATCAT 13259 Query 131134 AAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTT 131193 |||| ||| |||||||| || || |||| |||| || | ||| ||||||| |||| Sbjct 13258 AAAACAGTCAGCGAGACCTTGAATGCCAATCCCCAATGGACGATGCCTTAAATTCGATTT 13199 Query 131194 ACGCGAACATTCGGTGGGATAAAGGTT---AATGTCAATTATTTTGTTTAAATTGC--GC 131248 |||||| | || || | || |||||||||||| || ||||| | | Sbjct 13198 TTT---ACATTCTTTAAGAGAATAATATCCAACGTCAATTATTTTATTCAAATTCCTTGT 13142 Query 131249 ACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTT-TCGAGGTT 131307 | | || || ||| || ||| || || || ||||||||||| | ||| | || Sbjct 13141 AAT-CACCTT-TGTAACTTCTTTTAACTTATCAAAATCAAACGT-CTTGTTATTTTTGTC 13085 Query 131308 TACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCA 131367 ||||| | | | || ||||||||||||||||| || |||||| |||| Sbjct 13084 AACAAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTC-----CGCA 13030 Query 131368 ATACTGAACA-----ATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGT 131422 || || || ||||| | ||| || ||||| || || |||||||||| Sbjct 13029 CTAGTGTACTCCATGATTTCAGTGCATAAGTTACTTGAGACAATAGTACCCAAATTTTTC 12970 Query 131423 TGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACT 131482 ||||| |||||| ||| || || || || || | || || ||||| || | | Sbjct 12969 TGATTACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGTGTTCCCGTCTCAATT 12910 Query 131483 TGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATAT--TTGTATTG 131538 |||| | | || | ||| | ||||| | || || | | | | || | | Sbjct 12909 TGAGCCTGCAAGATTAA--GAACCAAAGTTTCTGCGCTTTCA-TCGTTTTCCTTCCAC-G 12854 Query 131539 GCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AAACGAACTGTCC 131596 ||| |||| || || | ||| || | | | | ||||| | || |||| | || | | Sbjct 12853 GCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAGTCATCACCCCAAAC-ATCT-TGC 12796 Query 131597 AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTC 131656 || ||||| || |||||||| | ||| | | || |||||||| || | Sbjct 12795 AATCCCCTGCATTCATCCGGGCACATTAGAGTCCAATCTTGATCCTTTTCAACTCTCTCC 12736 Query 131657 ATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTA 131716 || |||| ||| || ||||| | || || ||||| | | | | ||||||| | Sbjct 12735 ATGAACAGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTT- 12677 Query 131717 CCCATAAtttttttCAAATTTAA-AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775 ||| | |||||| || || || ||| || | || || | ||||| ||||||||||| Sbjct 12676 CCCGTGATTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCACGGTTCCAAATA 12617 Query 131776 CACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTT 131832 | ||| || || ||||| ||||| || ||||||| || || | | | ||| || Sbjct 12616 AATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATT 12557 Query 131833 GTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT 131877 || || |||||||| || || ||||||| ||||||| || Sbjct 12556 ATAAACACGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGT 12512 >seq45 Length=133594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 |||||| |||||||| ||||| ||||||||||| ||||| || | | | | | || Sbjct 54820 CAATACTAAATGTAAGGTAGACTCTTTTTGAATGTTGTAATCAGAGAGGGTTCTACCATC 54761 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || | || || || || | || | ||| |||||||| || || | || || ||||| Sbjct 54760 CTCTAATTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTATC 54701 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||| || | | || | ||| |||| | ||||||||| | ||| |||| Sbjct 54700 TTGAATCTTTGCCTTAACATTCTCGATAGTATCTGAAGGTTCAACTTCCAAAGTGATAGT 54641 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||| ||| || ||||| || |||||| Sbjct 54640 CTTTCCTGTCAAAGTCTTAACAAAAATCTGCATA 54607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934104803384