Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20meleagridis_20[genbank_20GCA_5F001593445.1_202016- 03-17] 57 sequences; 8,973,200 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq46 143 3e-29 >seq46 Length=385502 Score = 143 bits (158), Expect = 3e-29 Identities = 905/1428 (63%), Gaps = 42/1428 (3%) Strand=Plus/Minus Query 117870 TTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGG 117929 ||||| |||| | |||||| || || ||||| | | | | | ||||||| || | Sbjct 13911 TTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAATTGGCATTTTCCATATGGATG 13852 Query 117930 TTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCC 117989 |||| | ||| |||||| | | | |||| ||| || ||||||||||| || | Sbjct 13851 TTCAAAGATTGTGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAATTACTGTC 13792 Query 117990 TTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACG 118049 || ||| |||||||| |||||| | || || | ||||| || ||||| | Sbjct 13791 TTTTGCTTAATTTCCCAAACAGTCTTATAAAGCTCACGTATATCCTCCGGGATTGTAAGT 13732 Query 118050 ATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTT-TGA--CCAG 118106 |||||||| || ||| ||| | |||| || || | || ||| | | ||| Sbjct 13731 ATATTTTGAATACTGCCATTAT--TTG-CAATGATATTCTGCTTAAGCTTATCATCCCAT 13675 Query 118107 AGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCG 118166 | |||| | | | ||| | | | |||| ||| || |||| |||||||| | Sbjct 13674 AACCCAAGTTCTAGTAAATCATTTAGTAAATGCGGATTTACTACAAAGAACTCACCAGAT 13615 Query 118167 AGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAG 118226 || | | |||| || || | ||| |||||||||| | ||| |||||||| || Sbjct 13614 AGTACCCTACGGTGATAAATGTTTGAAGTGAATGGCTCAAAACTCTCGTTGTTACCTAAA 13555 Query 118227 ATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTT 118286 ||||| | ||||||||||| ||||| || | || | | ||||| | ||| | | Sbjct 13554 ATTTGTGAAGTGGAGGCTGTTGGCATTGGAGATATTAATAAAGAATTACGAATACCATAT 13495 Query 118287 TCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCC---CTGC 118343 | ||| | || || || | ||||| || | | || |||| | || | Sbjct 13494 TTGGAAATTCTATCTTTAAGTGAATCCCAATCACAAA-GCCCTGAGTCTGGCGTAACTCC 13436 Query 118344 C-ACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 | |||||||||| || | ||||||| || || || || | | |||| || ||||| Sbjct 13435 CCACATATCAAATTGTAAAATACCTTTACTTGCAGGAGAACCATAATATGTTTCGTATGG 13376 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || | ||||| | || |||| || || || ||||| | ||| || ||||| Sbjct 13375 TCCATATTTTTCCGCAAGCTCACAGCTAGCGTCAAGAGCTGCATAATAGATGACCTCAAA 13316 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || | ||||| | ||| || | || || || | | | || || ||||| Sbjct 13315 GATTTGTTTATTCAATTTCTTAGCTCCCTCCGACTCGTATGGTAAACGAAGCATCATAAA 13256 Query 118523 TACA-TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 ||| || ||||||||||| | || | || | ||| ||||| || | ||| || || Sbjct 13255 -ACAGTCAGCGAGACCTTGAATGCCAATCCCCAATGGACGATGCCTTAAATTCGATTTTT 13197 Query 118582 GAGCGGTCTCCACGGGATAAAAATTCCTA--TCGATAACCCTATTTAGATTTTTGGTGAC 118639 | | ||| | | || || || || | || || | |||| | ||| | || | Sbjct 13196 TA-CATTCTTTAAGAGAATAATAT-CCAACGTCAATTATTTTATTCAAATTCCTTGTAAT 13139 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699 |||||||| | ||| | | ||| || ||||||| | | | || | ||| | Sbjct 13138 CACCTTTGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTGTCAACAAA 13079 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 ||| |||||| | || |||||||||||||| || | || ||| | ||||||||| Sbjct 13078 CTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCGCACTAGTGTACTC 13019 Query 118760 TATAATTTCCGTGCACAAGTT---TGA-ACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 118815 || ||||| ||||| ||||| ||| || ||| || ||||| || || ||||| Sbjct 13018 CATGATTTCAGTGCATAAGTTACTTGAGAC----AATAGTACCCAAATTTTTCTGATT-- 12965 Query 118816 ACTTTG--TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||||| | || ||||| || ||| || |||| || |||||||| |||| | Sbjct 12964 ACTTTTACTATTTGCAGCATCTTTATAACAAATAAATGGTGTTCCCGTCTCAATTTGAGC 12905 Query 118874 CTTGAGAATAGCCTTCCAGACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 || | || ||| | | | || ||| || || | | || || | || Sbjct 12904 CTGCAAGATTAAGAACCAAAGTTTCTGC-GCTTTCATCGTTTTCCTTCCACGGCCTTGTT 12846 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTC--AAACTCTTCACCCACGGCCTCT-GAGAGCCCTG 118989 ||| |||| | || || |||| ||| || |||||| | ||| | | ||| Sbjct 12845 TCTCATACTCTTCATATAG--CTTCTTAAAGTCATCACCCCAAACATCTTGCAATCCCC- 12789 Query 118990 GTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 ||| || ||| ||||| | |||| ||| | | ||| ||||| | || |||||| Sbjct 12788 -TGCATTCATCCGGGCACATTAGAGTCCAATCTTGATCCTTTTCAACTCTCTCCATGAAC 12730 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || || || | |||||| || | |||||||| ||||| | ||||| | ||| ||| Sbjct 12729 AGATCAGGAACCCAGAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTCCCGTGA 12670 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || | | || | ||| || | | ||| ||||||||||||||| || | || Sbjct 12669 TTTTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCACGGTTCCAAATAAATTGCA 12610 Query 119169 ATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225 || | || ||||| | ||| | || | | |||||| |||||| | ||| | ||| Sbjct 12609 ATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACA 12550 Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 || | ||| ||||| | || | ||| ||||||||||| |||||| Sbjct 12549 CGCAACATCGGAATTAATCCGTTGGACCTTCCATTTGTCCCTCGAATA 12502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434759364920